View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_46 (Length: 252)
Name: NF9954_low_46
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 44 - 236
Target Start/End: Complemental strand, 5440651 - 5440459
Alignment:
| Q |
44 |
atatctaccattaatcatgttgtccatatcactattggttttatttatttatgttatgcaaaaaatgaaggcatcaatggaaattcagcttgtaaaagat |
143 |
Q |
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| T |
5440651 |
atatctaccattagtcatgttgtccatatcactattggttttatttatttatgttatgcaaaaaatgaaggcatcaatggaaattcagcttgtaaaagat |
5440552 |
T |
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| Q |
144 |
catggtacaacaacgtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatattttccacctatg |
236 |
Q |
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| T |
5440551 |
catggtacaacaatgtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatcttttccacctatg |
5440459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 3857549 - 3857627
Alignment:
| Q |
158 |
gtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatattttccacctatg |
236 |
Q |
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| T |
3857549 |
gtttgaatgtacaaatattgagaagacagccattcagtcatttgagtatgaggatgcaatcaaatattttcaacctatg |
3857627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 3866306 - 3866384
Alignment:
| Q |
158 |
gtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatattttccacctatg |
236 |
Q |
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| T |
3866306 |
gtttgaatgtacaaatattgagaagacagccattcagtcatttgagtatgaggatgcaatcaaatattttcaacctatg |
3866384 |
T |
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