View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_47 (Length: 250)
Name: NF9954_low_47
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_47 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 32006994 - 32006755
Alignment:
| Q |
10 |
gcagagactatcaacacctctactatgtttgtttttgtctgactctgcaacattgttttcaattaggggagattaaaaatttggtagtgaatagtggggc |
109 |
Q |
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| T |
32006994 |
gcagagactatcaacacctctactatgtttgtttttgtctgactctgcaacattgtttccaattaggggagattaaaaatttggtagtgaatagtggggc |
32006895 |
T |
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| Q |
110 |
ggtggaaaagatgatttcatagttccttatttcaaggattaagtttgtcattatggctaaaacagtgattgagaaagaggatatcggacggtcattaatg |
209 |
Q |
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| T |
32006894 |
ggtggaaaagatgatttcatagttccttatttcaaggattaagtttgtcattatggctaaaacagtgattgagaaaga-gatatcggatggtcattaatg |
32006796 |
T |
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| Q |
210 |
ctccagcacattcgcgtggattgtgcgaaattaaatttcgc |
250 |
Q |
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| T |
32006795 |
ctccagcacattcgcgtggattgtgcgaaattaaatttcgc |
32006755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 34777324 - 34777550
Alignment:
| Q |
24 |
cacctctactatgtttgtttttgtctgactctgcaacattgttttcaattaggggagattaaaaatttggtagtgaatagtggggcggtggaaaagatga |
123 |
Q |
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| T |
34777324 |
cacctctactatgtttgtttttgtctgactctgcaacattgtttccaattaggggagattaaaaatttggtagtgaatagtggggcggtggaaaagatga |
34777423 |
T |
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| Q |
124 |
tttcatagttccttatttcaaggattaagtttgtcattatggctaaaacagtgattgagaaagaggatatcggacggtcattaatgctccagcacattcg |
223 |
Q |
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| T |
34777424 |
tttcatagttccttatttcaaggattaagtttgtcattatggctaaaacagtgattgagaaagaggatatcggatggtcattaatgatccagcacattcg |
34777523 |
T |
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| Q |
224 |
cgtggattgtgcgaaattaaatttcgc |
250 |
Q |
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| T |
34777524 |
cgtggatcgtgcgaaattaaatttcgc |
34777550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 55067000 - 55066893
Alignment:
| Q |
143 |
aaggattaagtttgtcattatggctaaaacagtgattgagaaagaggatatcggacggtcattaatgctccagcacattcgcgtggattgtgcgaaatta |
242 |
Q |
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| T |
55067000 |
aaggattagttttgtcattttggctgaaataatgtatgagaaagaggatatccgacggtcattgatgatacagctcattcgcgtgggttgtgcgaaaata |
55066901 |
T |
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| Q |
243 |
aatttcgc |
250 |
Q |
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| T |
55066900 |
attttcgc |
55066893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 1552147 - 1552248
Alignment:
| Q |
139 |
tttcaaggattaagtttgtcattatggctaaaacagtgattgagaaag-aggatatcggacggtcattaatgctccagcacattcgcgtggattgtgcga |
237 |
Q |
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| T |
1552147 |
tttcaaggattaagtttgtcattttggatgaaatagtgattgagatagaagggtatcagacggtcattaatagtacaactcattcgcgtggatggtgcga |
1552246 |
T |
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| Q |
238 |
aa |
239 |
Q |
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|| |
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| T |
1552247 |
aa |
1552248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 30330922 - 30331025
Alignment:
| Q |
135 |
cttatttcaaggattaagtttgtcattatggctaaaacagtgattgagaaag-aggatatcggacggtcattaatgctccagcacattcgcgtggattgt |
233 |
Q |
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| T |
30330922 |
cttatttcaaggattagttttgtcattttggctcaaataatgaatgagaaagaaagatatcggacggtccttaatgctacacatcattcgcatggattgt |
30331021 |
T |
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| Q |
234 |
gcga |
237 |
Q |
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|||| |
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| T |
30331022 |
gcga |
30331025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 3993241 - 3993348
Alignment:
| Q |
10 |
gcagagactatcaacacctctactat----gtttgtttttgtctgactctgcaacattgttttcaattaggggagattaaaaatttggtagtgaatagtg |
105 |
Q |
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| T |
3993241 |
gcagagacagtcaacacctctactatatatgtttgcttttgtctgacttcgcaacactgttttcaattagtggagaatcaaaatttgttggtgaaaagtg |
3993340 |
T |
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| Q |
106 |
gggcggtg |
113 |
Q |
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| T |
3993341 |
aggcggtg |
3993348 |
T |
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