View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_49 (Length: 242)
Name: NF9954_low_49
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_49 |
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| [»] chr8 (9 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 3267730 - 3267945
Alignment:
| Q |
27 |
aatatttacatcacaccttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatcaggaat |
126 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| || |
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| T |
3267730 |
aatatttatatcacaccttggtttcattccaaacttgtttaatattgctgtgtttcaactcaaaaacaactagatttcccaaaaaaaagtcatcaggtat |
3267829 |
T |
|
| Q |
127 |
aaattcactagtaaatccctgccaatggagccatctcaattcttgagaaagatacccaaaatctccagtaagaccaacacaatcaagttttaagagtctc |
226 |
Q |
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| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| || ||||||||| |||||| |
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| T |
3267830 |
atattcatgagtaaatccctgccaatggagccatctcaattctttagaaagaaacccaaaagctccagtaagatcaacatgatgaagttttaaaagtctc |
3267929 |
T |
|
| Q |
227 |
aaattcatcatctcct |
242 |
Q |
| |
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|||||| ||||||||| |
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| T |
3267930 |
aaattcttcatctcct |
3267945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 3287075 - 3287249
Alignment:
| Q |
41 |
accttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatcaggaataaattcactagtaa |
140 |
Q |
| |
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|||||||||| ||||| ||||||||||| |||||||||| ||| |||||||||||||| ||||| ||| |||||||||||| ||| | | |||| |
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| T |
3287075 |
accttggttttattccatacttgtttaatgttgctgtgttttaattcaaaaacaactagatttccttgatgaaagtcatcaggtatacagttgaaggtaa |
3287174 |
T |
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| Q |
141 |
atccctgccaatggagccatctcaattcttgagaaagatacccaaaatctccagtaagaccaacacaatcaagtt |
215 |
Q |
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| T |
3287175 |
atccttgccaatggacccatctaagttctttagaaaggtttccataatctccagtgaggtcaacacaatcaagtt |
3287249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 13787083 - 13786908
Alignment:
| Q |
41 |
accttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatcaggaataaattcactagtaa |
140 |
Q |
| |
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||||||||||| ||||| || |||||||||||||||||| ||| |||||||||||||| ||||| ||| |||||||||||| ||| | | |||| |
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| T |
13787083 |
accttggtttcgttccatacgtgtttaatattgctgtgtgttaattcaaaaacaactagatttccttgatgaaagtcatcaggtatatagttgaaggtaa |
13786984 |
T |
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| Q |
141 |
atccctgccaatggagccatctcaattcttgagaaagatacccaaaatctccagtaagaccaacacaatcaagttt |
216 |
Q |
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|||| | |||||||| ||| |||| ||||| |||||| || ||| |||||||||| || |||||| ||||||||| |
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| T |
13786983 |
atcctttccaatggacccacctcagttctttagaaaggtaaccataatctccagtgaggtcaacacgatcaagttt |
13786908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 13808370 - 13808280
Alignment:
| Q |
27 |
aatatttacatcacaccttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtc |
117 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| || |||||||||||||||||| ||||||||||||| |||| ||| || |||||||||| |
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| T |
13808370 |
aatatttacatcacaccttagtttcattccagaccagtttaatattgctgtgttttaactcaaaaacagctagattttcctgataaaagtc |
13808280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 3263104 - 3263258
Alignment:
| Q |
41 |
accttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatcaggaataaattcactagtaa |
140 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||| ||| |||| |||||| || ||||| ||||| | ||||||||| ||| || | | |
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| T |
3263104 |
accttggtttcattccaaacttgtttgatattgctatgttttaagtcaataacaacgagatttccaagatagaggtcatcaggtatatatctgaaggcac |
3263203 |
T |
|
| Q |
141 |
atccctgccaatggagccatctcaattcttgagaaagatacccaaaatctccagt |
195 |
Q |
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| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||| |
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| T |
3263204 |
ttttctgccaatggacccatctcagttctttagaaagatacccataatctccagt |
3263258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 3407883 - 3408067
Alignment:
| Q |
41 |
accttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatcaggaataaattcactagtaa |
140 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | || ||| |||||| |||| || ||| || ||| |||||| | || | ||| | ||| |
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| T |
3407883 |
accttggtttccttccaaacttgtttaacattgctatattttaattcaaaagcaacgagattttcctgatcaaagtcgttgggtacaaagttgaaggtag |
3407982 |
T |
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| Q |
141 |
atccctgccaatggagccatctcaattcttgagaaagatacccaaaatctccagtaagaccaacacaatcaagttttaagagtct |
225 |
Q |
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||| ||||||| || ||||||||||| || ||||||||||||||||||||||| || |||||| |||||||| ||| ||||| |
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| T |
3407983 |
atcgttgccaattgacccatctcaattgtttggaaagatacccaaaatctccagtgaggtcaacacgatcaagttgtaaaagtct |
3408067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 7165209 - 7165284
Alignment:
| Q |
45 |
tggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatc |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| ||| || ||| |||| || ||| || ||||||||||||| |
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| T |
7165209 |
tggtttcattccaaacttgtttaattttgctgtgttttaagtctaaagcaacaaggttttcctgataaaagtcatc |
7165284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 3399070 - 3399148
Alignment:
| Q |
41 |
accttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcat |
119 |
Q |
| |
|
|||||||| || | |||||||||| ||| |||||| |||| ||| ||||||||||||| ||| |||||| |||||||| |
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|
| T |
3399070 |
accttggtctcctgccaaacttgtctaagattgctatgttttaattcaaaaacaactaaattttccagatcaaagtcat |
3399148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 31175484 - 31175406
Alignment:
| Q |
41 |
accttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcat |
119 |
Q |
| |
|
|||||||| || | |||||||||| ||| ||||| |||| ||| |||||||||||||| ||| |||||| |||||||| |
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| T |
31175484 |
accttggtctcctgccaaacttgtctaacattgccatgttttaattcaaaaacaactagattttccagatcaaagtcat |
31175406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 30417352 - 30417257
Alignment:
| Q |
147 |
gccaatggagccatctcaattcttgagaaagatacccaaaatctccagtaagaccaacacaatcaagttttaagagtctcaaattcatcatctcct |
242 |
Q |
| |
|
|||||| || |||||||| || || |||||| |||||||||||||||| || ||||||||||||||| ||| ||||||| ||| ||||||||| |
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|
| T |
30417352 |
gccaattgacccatctcagttgtttggaaagaaacccaaaatctccagtgaggtcaacacaatcaagttgtaaaagtctcagtttcttcatctcct |
30417257 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 20811903 - 20811838
Alignment:
| Q |
55 |
ccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatc |
120 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| |||||||||||||| |||||||||| | ||||||| |
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|
| T |
20811903 |
ccaaacttgtccaatattgctatgttttaattcaaaaacaactagatttcccagatcagagtcatc |
20811838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 20838258 - 20838193
Alignment:
| Q |
55 |
ccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatc |
120 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| |||||||||||||| ||||| |||| | ||||||| |
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|
| T |
20838258 |
ccaaacttgtccaatattgctatgttttaattcaaaaacaactagatttcctagatcagagtcatc |
20838193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 6906362 - 6906443
Alignment:
| Q |
36 |
atcacaccttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtc |
117 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| |||||| || ||| || ||||||||||| ||||| |||||||||| |
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|
| T |
6906362 |
atcataccttggtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgataaaagtc |
6906443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 32411638 - 32411704
Alignment:
| Q |
54 |
tccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcatc |
120 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| || | | |||| || |||||| ||||||||||||| |
|
|
| T |
32411638 |
tccaaacttgtctaatattgctgtgttttaagtccatagcaacaagatttccctgataaaagtcatc |
32411704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 6702 - 6785
Alignment:
| Q |
36 |
atcacaccttggtttctttccaaacttgtttaatattgctgtgttctaactcaaaaacaactagttttcccagataaaagtcat |
119 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| |||||| || ||| || ||||||||||| ||||| ||| |||||||| |
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|
| T |
6702 |
atcataccttggtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgatgaaagtcat |
6785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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