View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_52 (Length: 234)

Name: NF9954_low_52
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_52
NF9954_low_52
[»] scaffold0591 (1 HSPs)
scaffold0591 (14-215)||(5079-5280)
[»] chr8 (9 HSPs)
chr8 (14-215)||(28626004-28626205)
chr8 (14-215)||(28701018-28701216)
chr8 (14-215)||(28711920-28712121)
chr8 (14-215)||(28719267-28719468)
chr8 (14-215)||(28726909-28727110)
chr8 (14-158)||(28731609-28731753)
chr8 (14-90)||(28740548-28740624)
chr8 (14-77)||(28644498-28644561)
chr8 (14-78)||(28636764-28636828)
[»] chr6 (1 HSPs)
chr6 (17-66)||(29645808-29645857)
[»] chr7 (1 HSPs)
chr7 (125-159)||(49110255-49110289)


Alignment Details
Target: scaffold0591 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 5280 - 5079
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5280 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 5181  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 5081  T
Q  214 at 215  Q
    ||    
T  5080 at 5079  T

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Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 28626004 - 28626205
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28626004 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 28626103  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  28626104 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccatttccattcacatgacctaagtctaacacattaga 28626203  T
Q  214 at 215  Q
    ||    
T  28626204 at 28626205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 28701018 - 28701216
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||    
T  28701018 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccattggtagcaccatagagttgcaaa 28701117  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 213  Q
    |||||||| || |||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||||||||   |||||||||| ||||||||||    
T  28701118 gctgtataccaaatgagaaactttcttcatcttctaattcttttttttctgacctcctctctccatttccattcac---acctaagtctatcacattaga 28701214  T

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Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 28711920 - 28712121
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| || | ||    
T  28711920 gcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccattggtagcaccatagaactgcaaa 28712019  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 213  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  28712020 gttgtatagcaaatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccattaccattcacatgaccgaagtctaacacattaga 28712119  T
Q  214 at 215  Q
    ||    
T  28712120 at 28712121  T

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Target: chr8; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 28719267 - 28719468
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| || | ||    
T  28719267 gcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccattggtagcaccatagaactgcaaa 28719366  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 213  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  28719367 gttgtatagcaaatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccattaccattcacatgaccgaagtctaacacattaga 28719466  T
Q  214 at 215  Q
    ||    
T  28719467 at 28719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 28726909 - 28727110
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| || | ||    
T  28726909 gcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccattggtagcaccatagaactgcaaa 28727008  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtttttcggatttcctctctccatttccattcacatgacctaagtctttcacattaga 213  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  28727009 gttgtatagcaaatgagaaactttcttcatcttctaattcttgtttttctgatctcctctctccattaccattcacatgaccgaagtctaacacattaga 28727108  T
Q  214 at 215  Q
    ||    
T  28727109 at 28727110  T

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Target: chr8; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 28731609 - 28731753
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | | ||    
T  28731609 gcagagagttgagcacctttaccagctttttgcaacacatcaaaaacaccaagctgacttgcagaatggagtaccattggtagcaccatagagttgcaaa 28731708  T
Q  114 gctgtatagcatatgagaaactttcttcatcttctaattcttgtt 158  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  28731709 gctgtatagcatataagaaactttcttcatcttctaattcatgtt 28731753  T

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Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 28740548 - 28740624
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccat 90  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28740548 gcagagagttgagcatctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtcccat 28740624  T

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Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 28644498 - 28644561
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcag 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28644498 gcagagagttgagcacctttaccagttttttgcaacacatcaaatacaccaagctgacttgcag 28644561  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 28636764 - 28636828
Alignment:
Q  14 gcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcaga 78  Q
    ||||||||||||||| |||| |||||||||||||| |||||||| |||||||||| | |||||||    
T  28636764 gcagagagttgagcatcttttccagctttttgcaaaacatcaaaaacaccaagctcagttgcaga 28636828  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 29645857 - 29645808
Alignment:
Q  17 gagagttgagcacctttaccagctttttgcaacacatcaaatacaccaag 66  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  29645857 gagagttgagcacctttaccggctttttgcaacacttcaaaaacaccaag 29645808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 49110255 - 49110289
Alignment:
Q  125 tatgagaaactttcttcatcttctaattcttgttt 159  Q
    |||||||| ||||||||||||||||||||||||||    
T  49110255 tatgagaagctttcttcatcttctaattcttgttt 49110289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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