View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9954_low_58 (Length: 204)
Name: NF9954_low_58
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_58 |
 | |
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| [»] chr8 (10 HSPs) |
| |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28700836 - 28701039
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28700836 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctacgaaatgatccaagcttttgttcatcttgaatgaccaaacactttaacacatcatg |
28700935 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28700936 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagttgagcacct |
28701035 |
T |
|
| Q |
201 |
ttac |
204 |
Q |
| |
|
|||| |
|
|
| T |
28701036 |
ttac |
28701039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28625822 - 28626025
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
28625822 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatcaccaaacactttaacacatcatg |
28625921 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
28625922 |
tgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagttgagcacct |
28626021 |
T |
|
| Q |
201 |
ttac |
204 |
Q |
| |
|
|||| |
|
|
| T |
28626022 |
ttac |
28626025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28731427 - 28731630
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28731427 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgaacaaacactttaacacatcatg |
28731526 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28731527 |
tgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagttgagcacct |
28731626 |
T |
|
| Q |
201 |
ttac |
204 |
Q |
| |
|
|||| |
|
|
| T |
28731627 |
ttac |
28731630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28740366 - 28740569
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28740366 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgagcaaacactttaacacatcatg |
28740465 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28740466 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatgggcagagagttgagcatct |
28740565 |
T |
|
| Q |
201 |
ttac |
204 |
Q |
| |
|
|||| |
|
|
| T |
28740566 |
ttac |
28740569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28644316 - 28644519
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28644316 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaacacatcatg |
28644415 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
28644416 |
tgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacacaatctcatcggcagagagttgagcacct |
28644515 |
T |
|
| Q |
201 |
ttac |
204 |
Q |
| |
|
|||| |
|
|
| T |
28644516 |
ttac |
28644519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 28636582 - 28636783
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636582 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaacacatcatg |
28636681 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28636682 |
ggatgcaagaagagcaaggatgcgatccaacattttcggggcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagttgagcatct |
28636781 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
28636782 |
tt |
28636783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 28726727 - 28726928
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28726727 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgatcaaacactttaacacatcatg |
28726826 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
28726827 |
tgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagttgagcacct |
28726926 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
28726927 |
tt |
28726928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 28711738 - 28711939
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28711738 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaacacatcatg |
28711837 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
28711838 |
tgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagttgagcacct |
28711937 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
28711938 |
tt |
28711939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 28719085 - 28719286
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28719085 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaacacatcatg |
28719184 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
28719185 |
tgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagttgagcacct |
28719284 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
28719285 |
tt |
28719286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28653268 - 28653367
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28653268 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaacacatcatg |
28653367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5462 - 5259
Alignment:
| Q |
1 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaacacatcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5462 |
taggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttcaatgaccaaacactttaacacatcatg |
5363 |
T |
|
| Q |
101 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagttgagcacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5362 |
tgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagttgagcacct |
5263 |
T |
|
| Q |
201 |
ttac |
204 |
Q |
| |
|
|||| |
|
|
| T |
5262 |
ttac |
5259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 49110066 - 49110118
Alignment:
| Q |
105 |
gcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgca |
157 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| |||||| |||| |
|
|
| T |
49110066 |
gcaagaagagcaagaatgcgatctaacattttaggtgcatctggattggtgca |
49110118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 29645941 - 29645909
Alignment:
| Q |
105 |
gcaagaagagcaagaatgcgatccaacattttg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
29645941 |
gcaagaagagcaagaatgcgatccaacattttg |
29645909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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