View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_6 (Length: 544)

Name: NF9954_low_6
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_6
NF9954_low_6
[»] chr6 (22 HSPs)
chr6 (4-378)||(5164799-5165185)
chr6 (4-284)||(13879578-13879859)
chr6 (4-284)||(25942508-25942789)
chr6 (4-284)||(17693912-17694193)
chr6 (4-284)||(22350032-22350313)
chr6 (443-531)||(5164646-5164734)
chr6 (4-141)||(33331247-33331384)
chr6 (4-141)||(14738373-14738510)
chr6 (17-101)||(16553567-16553651)
chr6 (17-101)||(16630123-16630207)
chr6 (17-101)||(34165775-34165859)
chr6 (14-101)||(5408262-5408349)
chr6 (14-101)||(5412587-5412674)
chr6 (6-141)||(9035448-9035583)
chr6 (14-101)||(26067631-26067718)
chr6 (13-101)||(12158206-12158294)
chr6 (17-101)||(16651828-16651912)
chr6 (14-101)||(33309845-33309932)
chr6 (230-280)||(24432343-24432393)
chr6 (15-101)||(30444250-30444336)
chr6 (17-101)||(16567877-16567961)
chr6 (13-105)||(25462698-25462790)
[»] chr5 (24 HSPs)
chr5 (5-320)||(10628199-10628515)
chr5 (4-284)||(25446326-25446607)
chr5 (4-319)||(31781485-31781802)
chr5 (4-247)||(28788561-28788805)
chr5 (4-141)||(27448971-27449108)
chr5 (14-113)||(13694322-13694421)
chr5 (4-141)||(31397793-31397930)
chr5 (4-141)||(33790464-33790601)
chr5 (4-141)||(37557425-37557562)
chr5 (13-141)||(24556395-24556523)
chr5 (13-141)||(24597427-24597555)
chr5 (17-101)||(16408226-16408310)
chr5 (17-101)||(16545331-16545415)
chr5 (17-101)||(29721266-29721350)
chr5 (17-101)||(40381007-40381091)
chr5 (14-101)||(6746024-6746111)
chr5 (14-101)||(31543689-31543776)
chr5 (76-141)||(34841764-34841830)
chr5 (4-141)||(43596270-43596407)
chr5 (4-141)||(43629064-43629201)
chr5 (14-101)||(10750654-10750741)
chr5 (14-101)||(15356085-15356172)
chr5 (14-101)||(20505442-20505529)
chr5 (14-101)||(23666002-23666089)
[»] chr3 (41 HSPs)
chr3 (4-320)||(47881913-47882230)
chr3 (4-284)||(22625040-22625321)
chr3 (4-320)||(29912980-29913297)
chr3 (4-284)||(6304150-6304431)
chr3 (4-284)||(10204752-10205033)
chr3 (4-284)||(16458305-16458585)
chr3 (4-284)||(10611838-10612119)
chr3 (4-284)||(10897844-10898125)
chr3 (4-276)||(54189349-54189621)
chr3 (4-284)||(10097867-10098137)
chr3 (13-141)||(16263512-16263640)
chr3 (14-101)||(29811757-29811844)
chr3 (4-141)||(8516243-8516380)
chr3 (4-141)||(32479489-32479626)
chr3 (17-113)||(10210092-10210188)
chr3 (13-141)||(28489984-28490112)
chr3 (14-101)||(7763159-7763246)
chr3 (14-101)||(27421573-27421660)
chr3 (13-123)||(9602656-9602766)
chr3 (17-101)||(4599912-4599996)
chr3 (17-101)||(9635316-9635400)
chr3 (17-101)||(10057136-10057220)
chr3 (17-101)||(10059358-10059442)
chr3 (17-101)||(10061580-10061664)
chr3 (17-101)||(10063802-10063886)
chr3 (17-101)||(10066024-10066108)
chr3 (14-101)||(4309746-4309833)
chr3 (14-101)||(18098407-18098494)
chr3 (71-150)||(20630996-20631075)
chr3 (14-101)||(43227012-43227099)
chr3 (20-101)||(23199331-23199412)
chr3 (13-141)||(3324358-3324486)
chr3 (13-101)||(5192815-5192903)
chr3 (17-101)||(5259515-5259599)
chr3 (14-101)||(5192585-5192672)
chr3 (14-101)||(5898344-5898431)
chr3 (14-101)||(6065029-6065116)
chr3 (14-101)||(32891978-32892065)
chr3 (14-101)||(37407577-37407664)
chr3 (19-101)||(6717406-6717488)
chr3 (17-90)||(22834212-22834285)
[»] chr7 (28 HSPs)
chr7 (4-320)||(7070634-7070951)
chr7 (2-320)||(44015690-44016009)
chr7 (4-284)||(25352191-25352472)
chr7 (4-284)||(25406253-25406534)
chr7 (4-284)||(3323848-3324129)
chr7 (13-141)||(18412807-18412935)
chr7 (13-141)||(21988069-21988197)
chr7 (13-141)||(5817995-5818124)
chr7 (4-141)||(16884076-16884213)
chr7 (4-141)||(24262124-24262261)
chr7 (14-101)||(48490293-48490380)
chr7 (4-141)||(12405486-12405623)
chr7 (17-101)||(6593726-6593810)
chr7 (17-101)||(18391364-18391448)
chr7 (17-141)||(21645174-21645298)
chr7 (13-141)||(49090826-49090954)
chr7 (13-123)||(9185967-9186077)
chr7 (13-101)||(13289735-13289823)
chr7 (14-101)||(1048525-1048612)
chr7 (14-101)||(6047449-6047536)
chr7 (14-101)||(7093697-7093784)
chr7 (14-101)||(7350887-7350974)
chr7 (14-101)||(22135768-22135855)
chr7 (77-120)||(23083723-23083766)
chr7 (26-101)||(31157521-31157596)
chr7 (14-101)||(38394949-38395036)
chr7 (14-101)||(40550795-40550882)
chr7 (14-101)||(47675330-47675417)
[»] chr1 (18 HSPs)
chr1 (4-320)||(2400249-2400566)
chr1 (5-284)||(9522565-9522845)
chr1 (4-285)||(14997874-14998153)
chr1 (4-141)||(41397388-41397525)
chr1 (13-141)||(19359648-19359776)
chr1 (21-101)||(3805367-3805447)
chr1 (14-113)||(27338357-27338456)
chr1 (14-113)||(28222602-28222701)
chr1 (53-141)||(9024649-9024737)
chr1 (26-101)||(8348307-8348382)
chr1 (20-99)||(13126975-13127054)
chr1 (14-101)||(16227124-16227211)
chr1 (14-101)||(28202936-28203022)
chr1 (14-101)||(28841378-28841465)
chr1 (14-101)||(31658092-31658179)
chr1 (14-101)||(47178318-47178405)
chr1 (14-101)||(51750993-51751080)
chr1 (75-141)||(47099690-47099756)
[»] chr2 (11 HSPs)
chr2 (4-284)||(2737044-2737325)
chr2 (4-284)||(20053821-20054102)
chr2 (4-284)||(39680885-39681166)
chr2 (4-284)||(22716294-22716575)
chr2 (26-303)||(17932982-17933260)
chr2 (4-320)||(28456527-28456844)
chr2 (4-141)||(19348426-19348563)
chr2 (17-141)||(25402799-25402923)
chr2 (13-141)||(10446247-10446375)
chr2 (14-101)||(35217206-35217293)
chr2 (14-101)||(36560377-36560464)
[»] chr8 (23 HSPs)
chr8 (4-284)||(16756321-16756602)
chr8 (4-320)||(28891603-28891920)
chr8 (4-284)||(28328747-28329028)
chr8 (5-320)||(33033480-33033796)
chr8 (4-320)||(15945497-15945811)
chr8 (65-320)||(26269331-26269587)
chr8 (4-111)||(4819474-4819581)
chr8 (143-320)||(21038408-21038586)
chr8 (13-141)||(18853973-18854101)
chr8 (13-101)||(31577530-31577618)
chr8 (4-141)||(10685065-10685202)
chr8 (4-141)||(35744539-35744676)
chr8 (13-141)||(26300487-26300615)
chr8 (17-113)||(41366174-41366270)
chr8 (14-101)||(15069578-15069665)
chr8 (13-101)||(17848536-17848624)
chr8 (13-141)||(23800327-23800455)
chr8 (14-101)||(4732546-4732633)
chr8 (14-101)||(27827996-27828083)
chr8 (14-101)||(34255698-34255785)
chr8 (14-101)||(43080613-43080700)
chr8 (14-140)||(28314855-28314981)
chr8 (17-90)||(5591776-5591849)
[»] scaffold0256 (1 HSPs)
scaffold0256 (4-320)||(17164-17481)
[»] chr4 (17 HSPs)
chr4 (4-284)||(15313157-15313438)
chr4 (26-320)||(4559067-4559362)
chr4 (4-316)||(16633329-16633642)
chr4 (13-141)||(5147050-5147178)
chr4 (53-141)||(21549539-21549627)
chr4 (4-123)||(9225205-9225324)
chr4 (17-101)||(5136983-5137067)
chr4 (17-101)||(7123599-7123683)
chr4 (17-101)||(8394309-8394393)
chr4 (14-113)||(4588840-4588939)
chr4 (18-101)||(5206856-5206939)
chr4 (14-93)||(5872703-5872782)
chr4 (14-101)||(22781973-22782060)
chr4 (26-141)||(38983911-38984026)
chr4 (14-101)||(52094555-52094642)
chr4 (20-101)||(12740925-12741006)
chr4 (20-101)||(12749131-12749212)
[»] scaffold0023 (1 HSPs)
scaffold0023 (74-284)||(50267-50478)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-141)||(1656-1784)
[»] scaffold0355 (1 HSPs)
scaffold0355 (4-141)||(678-815)
[»] scaffold0197 (1 HSPs)
scaffold0197 (4-141)||(15110-15247)
[»] scaffold0028 (1 HSPs)
scaffold0028 (4-141)||(149756-149893)
[»] scaffold0842 (1 HSPs)
scaffold0842 (13-141)||(4004-4132)
[»] scaffold0188 (1 HSPs)
scaffold0188 (17-141)||(18753-18877)
[»] scaffold0016 (1 HSPs)
scaffold0016 (14-101)||(115491-115578)
[»] scaffold1899 (1 HSPs)
scaffold1899 (14-101)||(580-667)
[»] scaffold0025 (1 HSPs)
scaffold0025 (14-101)||(72753-72840)
[»] scaffold1908 (1 HSPs)
scaffold1908 (14-98)||(254-338)
[»] scaffold0140 (1 HSPs)
scaffold0140 (14-101)||(23082-23169)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 378
Target Start/End: Complemental strand, 5165185 - 5164799
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||    
T  5165185 ctttgagaatttcaaggatacaatgctttatggcaaagaggacactatcactttggagaaagttcaagcatctttgagaaccaaagagttaaccaagttc 5165086  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaagcaagaattccaggtcaaagtc 203  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||     
T  5165085 aaagagttgaaggttgatgatagtggagaaggcttgaaagtctcaagggagagaagtgaaaacacgggaaatggaaaagcaagaattccaagtcaaagtt 5164986  T
Q  204 taggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgga 303  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  5164985 taggtcgtagggtggtggtaataaaacaaagtacaaatgttttatttgtcacaatccatatcacttcaagaaggattgtcctcagagaaatggcaatgga 5164886  T
Q  304 agtgatagttcatccgt------------ctgaatattgaataagggtaaactttttggaaaaatcgaagtaggtaagttgtgttag 378  Q
    |||| ||||||||||||             |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  5164885 agtggtagttcatccgttcagatattgaattgaatattgaataagggtaaactttttggaaaaatcgatgtagataagttgtgttag 5164799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 13879578 - 13879859
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  13879578 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 13879677  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  13879678 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 13879777  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  13879778 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 13879859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 25942508 - 25942789
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  25942508 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 25942607  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  25942608 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 25942707  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  25942708 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 25942789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 17694193 - 17693912
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  17694193 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttgaccaagttc 17694094  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||| | ||| ||| | ||| |||||||||||||||||||||    
T  17694093 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaaaagaggaaaagggaaaggcaagaattccaggtcaaagt 17693994  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||  ||||| ||||||||    
T  17693993 ctaggtagaagggtgatggaaataaaacacagtacaaatgttttatttgtcacaatccaggtcactaaaagaaagattgtcc 17693912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 22350313 - 22350032
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||| ||||||||||||| | || |||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  22350313 ctttgagaatttcaaggatactatgatttatggcaaagatggcattatcactttggaggaagttcaagcagctttgagaaccaaagagttgaccaagttc 22350214  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagt 202  Q
    ||||||||||| ||||||||| ||||||||||||| || |||||||||  ||||||| |||| | |||||| |  |||| ||||||||||||||||||||    
T  22350213 aaagagttgaaagttgatgatagtggagaaggctttaatgtctcaagggggagaagtcaaaatagaggaaaagggaaagacaagaattccaggtcaaagt 22350114  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22350113 ctaggtcgaagggtgatggaaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtcc 22350032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 443 - 531
Target Start/End: Complemental strand, 5164734 - 5164646
Alignment:
Q  443 tgtgcttaggtatgtacgcaatttaattctaggaaagaaggctttcacatgctcatattttggtttggataagtggagataataaattg 531  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164734 tgtgtttaggtatgtacgcaattgaattctaggaaagaaggctttcacatgctcatattttggtttggataagtggagataataaattg 5164646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 33331247 - 33331384
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  33331247 ctttgagcatttcaaggataccattctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 33331346  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  33331347 aaggacatgagggttgatgaaggtagtgaaggcttgaa 33331384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 14738373 - 14738510
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| ||||   |||||||| || || ||||| ||||||||||| || || || |||||||||    
T  14738373 ctttgagcatttcaaggataccatcctttatggtaaggagggcactgctactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttc 14738472  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  |||||||||||||  || | |||||||||||    
T  14738473 aaggacatgaaggttgatgaaggtagtgaaggcttgaa 14738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16553567 - 16553651
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  16553567 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16553651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16630123 - 16630207
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  16630123 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 34165775 - 34165859
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  34165775 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 34165859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 5408349 - 5408262
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||| ||||| | ||||||||| ||||| ||||||||||| | ||| ||||| || ||||| |||||||    
T  5408349 ttcaaggataccatgctctatggaaaagaaggcactatcaccttggaagaagttcaagcggatttaagaaccaaggagttgaccaagt 5408262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 5412674 - 5412587
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||| ||||| | ||||||||| ||||| ||||||||||| | ||| ||||| || ||||| |||||||    
T  5412674 ttcaaggataccatgctctatggaaaagaaggcactatcaccttggaagaagttcaagcggatttaagaaccaaggagttgaccaagt 5412587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 9035583 - 9035448
Alignment:
Q  6 ttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaa 105  Q
    |||||| ||| |||||||  || |||||||| || ||||| ||||  |||||||| ||  ||||||  ||||||| ||| || || ||||||||||||||    
T  9035583 ttgagaattttaaggatatcatcctttatggaaaggaggaaactactactttggaggagtttcaagtggctttgaaaaccaaggaattaaccaagttcaa 9035484  T
Q  106 agagttgaaggttgatgattgtggagaaggcttgaa 141  Q
     ||  |||||||||||||  |||| |||||||||||    
T  9035483 ggacatgaaggttgatgaaggtggtgaaggcttgaa 9035448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 26067718 - 26067631
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||||| || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  26067718 ttcaaagataccatgctctatggcaaggaaggcactattaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 26067631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 12158206 - 12158294
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||| ||||||||||| ||||||||||||| | |||| |||| || || || |||||| | ||||||||||| || ||||| |||||||    
T  12158206 tttcgaggatacaatgatttatggcaaagaaggcactgtcaccttagaagatgttcaaacggctttgagaaccaaggagttgaccaagt 12158294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16651828 - 16651912
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||  ||||| ||||| || ||||| |||||||    
T  16651828 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagtggctttaagaaccaaggagttgaccaagt 16651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 33309845 - 33309932
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  33309845 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 33309932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 24432343 - 24432393
Alignment:
Q  230 caaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggatt 280  Q
    ||||||| ||||| ||| |||||||||| | ||||||||||||||||||||    
T  24432343 caaagtataaatgctttctttgtcacaaacaatgtcacttcaagaaggatt 24432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 30444250 - 30444336
Alignment:
Q  15 tcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||| ||||| ||||| ||||||||||| | |||| |||| | ||| ||||||||||  ||||||||||| || ||||| |||||||    
T  30444250 tcaacgataccatgctctatggcaaagaaggcactgtcacctaggaagaagttcaagtggctttgagaaccaaggagttgaccaagt 30444336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16567877 - 16567961
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | || | |||| ||||| ||||||||||| ||||| ||||| ||  |||| |||||||    
T  16567877 aaggataccatgctctatggcaaagaaggcattgtcaccttggaagaagttcaagcggctttaagaaccaagaagttgaccaagt 16567961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 25462790 - 25462698
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaa 105  Q
    |||||| ||||  ||||||||||| ||||| | |||| | || ||||| |||||||||||  |||||||||| || ||||| ||| |||||||    
T  25462790 tttcaaagatatcatgctttatggtaaagaaggcactgttaccttggaagaagttcaagcgactttgagaaccaaggagttgaccgagttcaa 25462698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 10628199 - 10628515
Alignment:
Q  5 tttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttca 104  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  10628199 tttgagaatttcaaggatacaatcctttatggcaaagaggacactatcactttggaggaagttcaagcaactttgagaaccaaagagttaaccaagttca 10628298  T
Q  105 aagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagtc 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||   |||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  10628299 aagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagagggagaagtgaaaacagaggaaatggaaaaggcaagaattccaggtcaaagtc 10628398  T
Q  204 taggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgga 303  Q
    ||||| | ||||||  ||| ||||||||||||||||||||||||||||||||||   |  |||||||||||||||||||||| | || || |||||||||    
T  10628399 taggtcgaagggtggtggtcataaaacaaagtacaaatgttttatttgtcacaacatagatcacttcaagaaggattgtcctgagaggaagggcaatgga 10628498  T
Q  304 agtgatagttcatccgt 320  Q
    |||| || |||||||||    
T  10628499 agtggtaattcatccgt 10628515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 25446326 - 25446607
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||| ||| ||||||||||||||    
T  25446326 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaaacagctttaagaaccaaaaagttaaccaagttc 25446425  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    |||||||| ||| |||||||| |||||||||||||||| |||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  25446426 aaagagttaaagtttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 25446525  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25446526 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtcc 25446607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 31781802 - 31781485
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| ||||||| |||||| |  || ||||||||||| ||||||||||||||| |||| ||||||| |||||||||| |||||||||||||| |||    
T  31781802 ctttgagaatttcaagaatacaaagagttttggcaaagagggcactatcactttggaggaaggtcaagcaactttgagaaccaaagagttaaccaaattc 31781703  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtc-aaag 201  Q
    || |||||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||| ||||||| | ||| | ||||||||  |||| ||||    
T  31781702 aaggagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtgaaaacagaggaaatgggaaatgtaagaattcatggtcaaaag 31781603  T
Q  202 tctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatg 301  Q
    |||||   | ||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | | || || |||||||    
T  31781602 tctagtccgaagggtggttgtaataaaacaaagtacaaatgttttatttgtcacaatccaggtcacttcaagaatgattgtcatgagaggaagggcaatg 31781503  T
Q  302 gaagtgatagttcatccg 319  Q
    | |||| |||||||||||    
T  31781502 gcagtggtagttcatccg 31781485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 28788561 - 28788805
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||| | |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  28788561 ctttgaaaatttcaaggatattatgctttatggcaaagaagacactatcactttggaggaagttcaagcagctttgagaaccaaagagttgaccaagttc 28788660  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||   |||||| |||||| ||||||| | ||| |||| |||||||| |||||||    
T  28788661 aaagagttgaaggttgaggatagtggagaaggcttgaatgtctcaaggggaagaagtcaaaacagaggaaatgggaaaggcaaaaattccagatcaaagt 28788760  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgtttta 247  Q
    |||||| | ||| ||  |||||||||||| |||||||||||||||    
T  28788761 ctaggtcgaaggatggtggtaataaaacagagtacaaatgtttta 28788805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 27449108 - 27448971
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || ||||||||||  |||||||| || || ||||| ||||||||||| || || || |||||||||    
T  27449108 ctttgagcatttcaaggataccatcctttatggtaaggaggacactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttc 27449009  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  |||||||||||||  || | |||||||||||    
T  27449008 aaggacatgaaggttgatgaaggtagtgaaggcttgaa 27448971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 13694421 - 13694322
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    ||||||||| | ||||| ||||||||||| |||| | |||||||| | ||||| ||||| |||||||| || || ||||||||||||||||| |||||||    
T  13694421 ttcaaggatgccatgctctatggcaaagaagacattgtcactttgaaggaagtccaagcggctttgaggaccaatgagttaaccaagttcaaggagttga 13694322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 31397793 - 31397930
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  31397793 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 31397892  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  31397893 aaggacatgagggttgatgaaggtagtgaaggcttgaa 31397930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 33790601 - 33790464
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  33790601 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 33790502  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  33790501 aaggacatgagggttgatgaaggtagtgaaggcttgaa 33790464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 37557425 - 37557562
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  37557425 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 37557524  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  37557525 aaggacatgagggttgatgaaggtagtgaaggcttgaa 37557562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 24556395 - 24556523
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| ||| |  |||||||| ||||| ||| | ||||||||||| ||| | || ||||||||||| || ||     
T  24556395 tttcaaggataccatcctttatggtaaggagggcaccactactttggaggaagtccaatcggctttgagaaccaaataattgaccaagttcaaggactta 24556494  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    ||||||||||||  ||| |||||||||||    
T  24556495 aaggttgatgatgttggtgaaggcttgaa 24556523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 24597427 - 24597555
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| ||| |  |||||||| ||||| ||| | ||||||||||| ||| | || ||||||||||| || ||     
T  24597427 tttcaaggataccatcctttatggtaaggagggcaccactactttggaggaagtccaatcggctttgagaaccaaataattgaccaagttcaaggactta 24597526  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    ||||||||||||  ||| |||||||||||    
T  24597527 aaggttgatgatgttggtgaaggcttgaa 24597555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16408226 - 16408310
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  16408226 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16408310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 16545331 - 16545415
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  16545331 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16545415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 29721266 - 29721350
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  29721266 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 29721350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 40381007 - 40381091
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  40381007 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 40381091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 6746024 - 6746111
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  6746024 ttcaaagataccatgctctatggcaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 6746111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 31543689 - 31543776
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||||||||||||||| || ||||| |||||||    
T  31543689 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcagctttgagaaccaaggagttgaccaagt 31543776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 34841830 - 34841764
Alignment:
Q  76 tttgagaacgaaagagttaaccaagttcaaagagttg-aaggttgatgattgtggagaaggcttgaa 141  Q
    ||||||||| || |||||||||||||||||||| ||| |||||||||||  |||| |||||||||||    
T  34841830 tttgagaaccaaggagttaaccaagttcaaagatttgaaaggttgatgaaagtggtgaaggcttgaa 34841764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 43596407 - 43596270
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  ||||||| |||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || |||||||||    
T  43596407 ctttgagcatttcaagaataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttc 43596308  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||||| |||||||  || | |||||||||||    
T  43596307 aaggacatgaagattgatgaaggtagtgaaggcttgaa 43596270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 43629201 - 43629064
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  ||||||| |||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || |||||||||    
T  43629201 ctttgagcatttcaagaataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttc 43629102  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||||| |||||||  || | |||||||||||    
T  43629101 aaggacatgaagattgatgaaggtagtgaaggcttgaa 43629064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 10750654 - 10750741
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  10750654 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 10750741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 15356172 - 15356085
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  15356172 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 15356085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 20505529 - 20505442
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||| ||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  20505529 ttcaaagatactatgctctatgggaaagaaggcactgttaccttggaagaagttcaagcggctttgagaactaaggagttgaccaagt 20505442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 23666002 - 23666089
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  23666002 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 23666089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 47882230 - 47881913
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||||    
T  47882230 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcaactttgagaaccaaagagttgaccaagttc 47882131  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatga-aaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||   |||||| |||||| ||||||||| ||| |||||||||||||||||||||    
T  47882130 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaaggggaagaagtcaaaacagaggaaatgagaaaggcaagaattccaggtcaaagt 47882031  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | ||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||| |||||||     
T  47882030 ctaggtcgaagggtggtggtaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtccggagagaaaaggcaatga 47881931  T
Q  303 aagtgatagttcatccgt 320  Q
    ||||| || | |||||||    
T  47881930 aagtggtaatccatccgt 47881913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 22625321 - 22625040
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  22625321 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 22625222  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  22625221 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 22625122  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22625121 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtcc 22625040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 29913297 - 29912980
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  29913297 ctttgagaatttcaaggatactatgctttatggcaaatagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttgaccaagttc 29913198  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||| |||||| ||| ||| | ||| |||||||||||||||||||||    
T  29913197 aaagagttgaaggttgaagatagtggagaaggcttgaatgtctcaagggagagaagtcaaaacagaggaaaagggaaaggcaagaattccaggtcaaagt 29913098  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||  | ||||| ||||||||    
T  29913097 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaaaaaggattgtccggaaagaaagggcaatgg 29912998  T
Q  303 aagtgatagttcatccgt 320  Q
    | ||| || | |||||||    
T  29912997 aggtggtaatccatccgt 29912980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 6304150 - 6304431
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  6304150 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 6304249  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  6304250 aaagagttgaaggttgatgatagtggagaaggcttgaatatctcaagggggagaagtcacaacaaaggaaaagggaaaggcaagaattccaggtcaaagt 6304349  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  6304350 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaaaaaggattgtcc 6304431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 10205033 - 10204752
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  10205033 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 10204934  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  | || || | |||| ||| ||| | ||| |||||||||||||||||||||    
T  10204933 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggtgacgtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 10204834  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  10204833 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 10204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 16458305 - 16458585
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||    
T  16458305 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagttttgagaaccaaa-agttaaccaagttc 16458403  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| |||||| |  |||| ||||||||||||||||||||    
T  16458404 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaagacaagaattccaggtcaaagt 16458503  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  16458504 ctaggtcgaagggtgatggcaataaaacacagtacaaatattttatttgtcataatccaggtcacttcaagaaggattgtcc 16458585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 10612119 - 10611838
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| ||| |||||||| ||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  10612119 ctttgagaatttaaaggatactatgctctatggcaaagacggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttgaccaagttc 10612020  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||   |||||| |||||| ||| ||| | ||| |||||||||||||||||||||    
T  10612019 aaagatttgaaggttgatgatagtggagaaggcttgaatgtctcaaggggaagaagtcaaaacagaggaaaagggaaaggcaagaattccaggtcaaagt 10611920  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  10611919 ctaggtcgaagggtgatggaaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaagattgtcc 10611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 10897844 - 10898125
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||    
T  10897844 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagttttgagaaccaaagagttgaccaagttc 10897943  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaaca-caggaaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | | ||  || ||| | ||| |||||||||||||||||||||    
T  10897944 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagagcagaagaaaagggaaaggcaagaattccaggtcaaagt 10898043  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||| ||| || ||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  10898044 ctaggtcgaaggctgatggcaataaaacatagtacaaatgttttatttgtcacaatccagctcacttcaagaaggattgtcc 10898125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 54189349 - 54189621
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  54189349 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttgaccaagttc 54189448  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  54189449 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 54189548  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaag 276  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| ||| |  ||||||||||||||    
T  54189549 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataat-ctggtcacttcaagaag 54189621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 10098137 - 10097867
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||       
T  10098137 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagc-- 10098040  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagt 202  Q
        || |     |||||||| |||||||||||||||| |||||||||  | ||||| | |||| |||||| |  |||| ||||||||||||||||||||    
T  10098039 ----agct-----ttgatgatagtggagaaggcttgaatgtctcaagggggtgaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 10097949  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  10097948 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 10097867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 16263640 - 16263512
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||  |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||    
T  16263640 tttcaaggataccatcctttatggtaaggagagcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 16263541  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  |||| |||||||||||    
T  16263540 aaggttgatgaaggtggtgaaggcttgaa 16263512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 29811757 - 29811844
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||||||| | |||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| |||||||    
T  29811757 ttcaaggataccatgctctatggcaaataagacactgtcaccttggaagaagttcaagcggctttaagaaccaaagagttgaccaagt 29811844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 8516380 - 8516243
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  8516380 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 8516281  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  8516280 aaggacatgagggttgatgaaggtagtgaaggcttgaa 8516243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 32479626 - 32479489
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  32479626 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 32479527  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  32479526 aaggacatgagggttgatgaaggtagtgaaggcttgaa 32479489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 10210092 - 10210188
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||||| |||||| ||||    
T  10210092 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagtccaaagacttga 10210188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 28489984 - 28490112
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| ||  ||    
T  28489984 tttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacatg 28490083  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  || | |||||||||||    
T  28490084 aaggttgatgaaggtagtgaaggcttgaa 28490112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 7763159 - 7763246
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||||||||| | || | |||| ||||| ||||||||||| ||||| ||||| || |||||||||||||    
T  7763159 ttcaaggataccatgctctatggcaaagaaggcattgtcaccttggaagaagttcaagcggctttaagaaccaaggagttaaccaagt 7763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 27421573 - 27421660
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||||||||| | || | |||||||| | ||||||||||| ||||||||||| || ||||| |||||||    
T  27421573 ttcaaggataccatgctctatggcaaagaaggcattgtcactttgaaagaagttcaagcggctttgagaaccaaggagttgaccaagt 27421660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 9602656 - 9602766
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| ||| |  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||    
T  9602656 tttcaaggataccatcctttatggtaaggagggcaccactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 9602755  T
Q  113 aaggttgatga 123  Q
    |||||||||||    
T  9602756 aaggttgatga 9602766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 4599996 - 4599912
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  4599996 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 4599912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 9635400 - 9635316
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  9635400 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaatgagttgaccaagt 9635316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 10057136 - 10057220
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  10057136 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 10057220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 10059358 - 10059442
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  10059358 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 10059442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 10061580 - 10061664
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  10061580 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 10061664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 10063802 - 10063886
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  10063802 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 10063886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 10066024 - 10066108
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  10066024 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 10066108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 4309833 - 4309746
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  4309833 ttcaaagataccatgctatatggcaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 4309746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 18098494 - 18098407
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  18098494 ttcaaagataccatgctctatggcaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 18098407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 20630996 - 20631075
Alignment:
Q  71 gcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaag 150  Q
    ||||| |||||||| |||||||||| | |||| | ||| ||||||||||||||| |||| ||||||||||  ||||||||    
T  20630996 gcagcattgagaactaaagagttaatcgagttgagagacttgaaggttgatgatagtggtgaaggcttgagtgtctcaag 20631075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 43227012 - 43227099
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| |||||| | || ||||| ||||||||||  ||||||||||| || ||||| |||||||    
T  43227012 ttcaaagataccatgctctatggcaaagaagacactgttaccttggaagaagttcaagaggctttgagaaccaaggagttgaccaagt 43227099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 23199412 - 23199331
Alignment:
Q  20 gatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  23199412 gataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 23199331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 3324358 - 3324486
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || || | ||| |  |||||||| || || ||||  || |||||||| || || || ||||||||||| || |||    
T  3324358 tttcaaggataccatcctttatggtaaggaaggcaccactactttggaggaggtccaagaggcgttgagaaccaaggaattgaccaagttcaaggacttg 3324457  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  |||| |||||||||||    
T  3324458 aaggttgatgaaggtggtgaaggcttgaa 3324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 5192815 - 5192903
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  5192815 tttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 5192903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 5259599 - 5259515
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | || | |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  5259599 aaggataccatgctctatggcaaagaaggcattgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 5259515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 5192585 - 5192672
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  5192585 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 5192672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 5898344 - 5898431
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| || || ||||||||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  5898344 ttcaaagataccattctctatggcaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 5898431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 6065116 - 6065029
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  6065116 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 6065029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 32891978 - 32892065
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||| ||||| | ||||  ||| ||||| ||||||||| | ||||||||||| || ||||| |||||||    
T  32891978 ttcaaggataccatgctctatgggaaagaaggcactgccaccttggaagaagttcaaccggctttgagaaccaaggagttgaccaagt 32892065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 37407577 - 37407664
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||  ||||| ||||||||||| | |||| |||| ||||| ||||||||| | ||||| ||||| || ||||| |||||||    
T  37407577 ttcaaggatatcatgctctatggcaaagaaggcactgtcaccttggaagaagttcaaccggctttaagaaccaaggagttgaccaagt 37407664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 6717406 - 6717488
Alignment:
Q  19 ggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||  ||||| ||||| || ||||| |||||||    
T  6717406 ggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagtggctttaagaaccaaggagttgaccaagt 6717488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 22834285 - 22834212
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaaga 90  Q
    |||||||| ||||| ||||||||||| | |||  |||| ||||| ||| ||||||| ||||||||||| |||||    
T  22834285 aaggataccatgctctatggcaaagaaggcaccgtcaccttggaagaaattcaagcggctttgagaaccaaaga 22834212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 7070634 - 7070951
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  7070634 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcggctttgagaaccaaagagttaaccaagttc 7070733  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||| ||| ||| | ||| |||||||||||||||||||||    
T  7070734 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaacaaaggaaaagggaaaggcaagaattccaggtcaaagt 7070833  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||  | ||||| | ||||||    
T  7070834 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtccggagagaaaggacaatgg 7070933  T
Q  303 aagtgatagttcatccgt 320  Q
    | |||  |||||||||||    
T  7070934 aggtggaagttcatccgt 7070951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 44016009 - 44015690
Alignment:
Q  2 ttctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||||| |||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  44016009 ttctttgagaatttcaaggatattatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaactaagt 44015910  T
Q  102 tcaaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||| ||||||| | ||| ||||||||| |||||||||    
T  44015909 tcaaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaacagaggaaatgggaaaggcaagaatttcaggtcaaa 44015810  T
Q  201 gtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaat 300  Q
    |||||||| | ||||||  |||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||||  | ||||| ||||||    
T  44015809 gtctaggtcgaagggtggtggtaataaaacacagtacaaatattttatttgtcacaatccaggccacttcaagaaggattgtccggagagaaagggcaat 44015710  T
Q  301 ggaagtgatagttcatccgt 320  Q
    ||||||| || | |||||||    
T  44015709 ggaagtggtaatccatccgt 44015690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 25352191 - 25352472
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  25352191 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 25352290  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  25352291 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 25352390  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  25352391 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 25352472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 25406253 - 25406534
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  25406253 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 25406352  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  25406353 aaagagttgaaggttgatgatagtggagaaggcttgaatatctcaagggggagaagtcacaacagaggaaaagggaaaggcaagaattccaggtcaaagt 25406452  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  25406453 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 25406534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 3324129 - 3323848
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3324129 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 3324030  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||| | ||||  || ||| | ||| |||||||||||||||||||||    
T  3324029 aaagagttgaaggttgatgatagtggagaaggcttgaatatctcaagggggagaagtcacaacaagggaaaagggaaaggcaagaattccaggtcaaagt 3323930  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  3323929 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 3323848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 18412935 - 18412807
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||    
T  18412935 tttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 18412836  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  || | |||||||||||    
T  18412835 aaggttgatgaaggtagtgaaggcttgaa 18412807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 21988197 - 21988069
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    ||||| |||||| || |||||||| ||||||| |||||  |||||| | ||||| ||||| ||||||||||| || || || ||||||||||| || |||    
T  21988197 tttcacggataccatcctttatggtaaagagggcactactactttgaaggaagtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 21988098  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    ||||| |||||  |||| |||||||||||    
T  21988097 aaggtggatgaaggtggtgaaggcttgaa 21988069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 5817995 - 5818124
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaag-aggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagtt 111  Q
    |||||||||||| || |||||||| |||| ||| ||| |  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || ||    
T  5817995 tttcaaggataccatcctttatggaaaaggagggcaccactactttggaggaggtacaagcggctttgagaaccaaggaattgaccaagttcaaggactt 5818094  T
Q  112 gaaggttgatgattgtggagaaggcttgaa 141  Q
    ||||||||||||  |||| |||||||||||    
T  5818095 gaaggttgatgagggtggtgaaggcttgaa 5818124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 16884213 - 16884076
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  16884213 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 16884114  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  16884113 aaggacatgagggttgatgaaggtagtgaaggcttgaa 16884076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 24262124 - 24262261
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  24262124 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 24262223  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  24262224 aaggacatgagggttgatgaaggtagtgaaggcttgaa 24262261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 48490293 - 48490380
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  48490293 ttcaaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 48490380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 12405623 - 12405486
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| ||  ||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||| | || |||||||||    
T  12405623 ctttgagcatttcaaggataccatcatttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaaaaattgaccaagttc 12405524  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  |||||||||||||  || | |||||||||||    
T  12405523 aaggacatgaaggttgatgaaggtagtgaaggcttgaa 12405486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 6593810 - 6593726
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  6593810 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 6593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 18391448 - 18391364
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  18391448 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 18391364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 21645298 - 21645174
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaagg 116  Q
    |||||||| ||  ||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||||||    
T  21645298 aaggataccatcatttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttgaagg 21645199  T
Q  117 ttgatgattgtggagaaggcttgaa 141  Q
    |||||||  || | |||||||||||    
T  21645198 ttgatgaaggtagtgaaggcttgaa 21645174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 49090954 - 49090826
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| ||| |  |||||||| || || ||||| ||||||||||  || || || ||||||||||| || |||    
T  49090954 tttcaaggataccatcctttatggtaaggagggcaccactactttggaggaggtccaagcggctttgagaaacaaggaattgaccaagttcaatgacttg 49090855  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  |||| |||| ||||||    
T  49090854 aaggttgatgaaggtggtgaagacttgaa 49090826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 9185967 - 9186077
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||  || |||||||| || |||| |||||  ||||||||  | || ||||| ||||||||||| || || || ||||||||||| || |||    
T  9185967 tttcaaggatatcatcctttatggtaaggagggcactactactttggagaaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 9186066  T
Q  113 aaggttgatga 123  Q
    |||||||||||    
T  9186067 aaggttgatga 9186077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 13289823 - 13289735
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| |||||| ||| | ||||||||||| | |||| |||| ||||| ||||||||| || |||||||||| || ||||| |||||||    
T  13289823 tttcatggataccatgttctatggcaaagaaggcactgtcacattggaagaagttcaaacaactttgagaaccaaggagttgaccaagt 13289735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 1048612 - 1048525
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  1048612 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 1048525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 6047449 - 6047536
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| || || ||||||||||| | || | |||| ||||| ||||||||||| ||||||||||  || ||||| |||||||    
T  6047449 ttcaaggataccattctatatggcaaagaaggcattgtcaccttggaagaagttcaagcggctttgagaatcaacgagtttaccaagt 6047536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 7093784 - 7093697
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  7093784 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 7093697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 7350974 - 7350887
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  7350974 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 7350887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 22135768 - 22135855
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  22135768 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 22135855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 23083766 - 23083723
Alignment:
Q  77 ttgagaacgaaagagttaaccaagttcaaagagttgaaggttga 120  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  23083766 ttgagaacgaaagagttaaccaagttcaacaacttgaaggttga 23083723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 31157596 - 31157521
Alignment:
Q  26 atgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| |||||||| || | |||| | || ||||| ||||||||||||||||||||||| || ||||| |||||||    
T  31157596 atgctctatggcaaggaaggcactgttaccttggaagaagttcaagcagctttgagaactaaggagttgaccaagt 31157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 38394949 - 38395036
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  38394949 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 38395036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 40550795 - 40550882
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  40550795 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 40550882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 47675417 - 47675330
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| | ||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| |  ||||| |||||||    
T  47675417 ttcaaggataccatgctctgtggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccagggagttgaccaagt 47675330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 2400566 - 2400249
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  2400566 ctttgagaatttcaaggatactatgctttatggcaaagatggcactatcactttggaggaagttcaagcagctttgaaaaccaaagagttaaccaagttc 2400467  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||| | |||||| ||||||| | ||| |||||||||||||||||||||    
T  2400466 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaaatcaaaacagaggaaatgggaaaggcaagaattccaggtcaaagt 2400367  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | ||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||  | ||||| ||||||||    
T  2400366 ctaggtcgaagggtggtggtaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggactgtccggagagaaagggcaatgg 2400267  T
Q  303 aagtgatagttcatccgt 320  Q
    ||||| || | |||||||    
T  2400266 aagtggtaatccatccgt 2400249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 9522565 - 9522845
Alignment:
Q  5 tttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttca 104  Q
    ||||||| |||||||||||  ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||    
T  9522565 tttgagaatttcaaggatattatgctttatggcaaaaagggcactatcactttggaggaagtgcaagcagctttaagaaccaaagagttaaccaagttca 9522664  T
Q  105 aagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagtc 203  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| |||||| |  |||| ||||||||| |||||||||||    
T  9522665 aagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcataacagaggaaaagggaaagccaagaattctaggtcaaagtc 9522764  T
Q  204 taggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    ||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  9522765 taggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 9522845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 14997874 - 14998153
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||  |||| ||||||||||| |||||| ||||||| |||    
T  14997874 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagtctaagcggctttgagaaccaaagagctaaccaaattc 14997973  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagt 202  Q
    || ||||| |||||||||||| |||||||||||||||| ||||||||| |||||| ||| |||| |||||||| ||||| |||||| | |||||||||||    
T  14997974 aaggagttaaaggttgatgatagtggagaaggcttgaatgtctcaagggagagaattgacaacagaggaaatggaaaagacaagaaattcaggtcaaagt 14998073  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcct 285  Q
    ||| || | ||||||  ||| |||||||||   ||||||||||||||||||||| | || |||||||||||||| ||||||||    
T  14998074 ctatgtcgaagggtggtggtgataaaacaa---acaaatgttttatttgtcacacttcaggtcacttcaagaagaattgtcct 14998153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 41397525 - 41397388
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  41397525 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 41397426  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  |||||||||||||  || | |||||||||||    
T  41397425 aaggacatgaaggttgatgaaggtagtgaaggcttgaa 41397388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 19359648 - 19359776
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| |||||  |||||||| ||  | ||||| ||||||||||| || || || ||||||||||| || |||    
T  19359648 tttcaaggataccatcctttatggtaaggagggcactactactttggaggagttccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 19359747  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  || | |||||||||||    
T  19359748 aaggttgatgaaggtagtgaaggcttgaa 19359776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 3805447 - 3805367
Alignment:
Q  21 atacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||| ||||| ||||||||||| |||||| |||| || || ||||||||||| ||||||||||| || ||||| |||||||    
T  3805447 ataccatgctctatggcaaagaagacactgtcaccttagaagaagttcaagcggctttgagaaccaaggagttgaccaagt 3805367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 27338456 - 27338357
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    ||||| ||||| ||||| ||||| ||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| ||||||| |||||| ||||    
T  27338456 ttcaaagataccatgctctatgggaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagtccaaagacttga 27338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 28222701 - 28222602
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    ||||||||||| ||||| ||||| ||||| | |||| |||| ||||| |||||||| || ||||| ||||| || ||||| ||||||| |||||| ||||    
T  28222701 ttcaaggataccatgctatatggaaaagaaggcactgtcaccttggaagaagttcaggcggctttaagaaccaaggagttgaccaagtccaaagacttga 28222602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 9024649 - 9024737
Alignment:
Q  53 actttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    ||||||||||| ||  ||||  |||||||||| ||||| || |||||||| || || ||||||||||||||  |||| |||||||||||    
T  9024649 actttggatgaggtctaagcgactttgagaaccaaagaattgaccaagtttaaggacttgaaggttgatgagggtggtgaaggcttgaa 9024737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 8348382 - 8348307
Alignment:
Q  26 atgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||||||| | | |||||| |  ||||| ||||||||||| ||||||||||| || |||||||||||||    
T  8348382 atgctctatggcaaataaggcactattatcttggaagaagttcaagcggctttgagaaccaaggagttaaccaagt 8348307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 13127054 - 13126975
Alignment:
Q  20 gatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaa 99  Q
    ||||| ||||| ||||||||||| |  ||| | || ||||| ||||||||||||||||||||||| || ||||| |||||    
T  13127054 gataccatgctctatggcaaagaaggtactgttaccttggaagaagttcaagcagctttgagaaccaaggagttgaccaa 13126975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 16227124 - 16227211
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  16227124 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 16227211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 28203022 - 28202936
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | |||| | || ||||||||| ||||||| ||||||||||| || ||||| |||||||    
T  28203022 ttcaaagataccatgctctatggcaaagaaggcactgt-accttggatgaaattcaagcggctttgagaaccaaggagttgaccaagt 28202936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 28841378 - 28841465
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || |||||| | || ||||| ||||||||||  ||||||||||| || ||||| |||||||    
T  28841378 ttcaaagataccatgctctatggcaaggaagacactgttaccttggaagaagttcaagaggctttgagaaccaaggagttgaccaagt 28841465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 31658092 - 31658179
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||||||||| | || | |||| ||||| ||||||||||| ||||| ||||| || || || |||||||    
T  31658092 ttcaaggataccatgctctatggcaaagaaggcattgtcaccttggaagaagttcaagcggctttaagaaccaaggaattgaccaagt 31658179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 47178318 - 47178405
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  47178318 ttcaaagataccatgctctatggcaaggaaggcactgttacattggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 47178405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 51750993 - 51751080
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  51750993 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 51751080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 47099690 - 47099756
Alignment:
Q  75 ctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||| || || |||||||||||||| || ||||||||||| ||  |||| |||||||||||    
T  47099690 ctttgagaaccaaggaattaaccaagttcaaggacttgaaggttgaagaaggtggtgaaggcttgaa 47099756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 2737044 - 2737325
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||    
T  2737044 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagtttaagcagctttgagaaccaaagagttaaccaagttc 2737143  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||| ||| ||| | ||| |||||||||||||||||||||    
T  2737144 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaacagaggaaaagggaaaggcaagaattccaggtcaaagt 2737243  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  2737244 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 2737325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 20054102 - 20053821
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||    
T  20054102 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcaactttgagaaccaaagagttaaccaagttc 20054003  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||| | ||| ||| | ||| |||||||||||||||||||||    
T  20054002 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaatagaggaaaagggaaaggcaagaattccaggtcaaagt 20053903  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20053902 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtcc 20053821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 39680885 - 39681166
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  39680885 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 39680984  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  39680985 aaagagttgaaggttgatgatagtggagaaggcttgaatatctcaagggggagaagtcacaacaaaggaaaagggaaaggcaagaattccaggtcaaagt 39681084  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  39681085 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 39681166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 22716575 - 22716294
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||    
T  22716575 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagttttgagaaccaaaaagttaaccaagttc 22716476  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| |||||| |  |||| ||||||||||||||||||||    
T  22716475 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaaaagggaaagacaagaattccaggtcaaagt 22716376  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  22716375 ctaggtcgaagggtgatggcaataaaacacagtacaaatattttatttgtcataatccaggtcacttcaagaaggattgtcc 22716294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 26 - 303
Target Start/End: Original strand, 17932982 - 17933260
Alignment:
Q  26 atgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgatt 125  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||     
T  17932982 atgctttatggcaaagagggcactatcactttggaggaagttcaagcggctttgagaaccaaagagttgaccaagttcaaagagttgaaggttgatgata 17933081  T
Q  126 gtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagtctaggttgtagggtgacggtaa 224  Q
    |||||||||||||||| |||||||||  ||||||| |||||| ||| ||| | ||| ||||||||||||||||||||||||| | | ||||||| || ||    
T  17933082 gtggagaaggcttgaatgtctcaagggggagaagtcaaaacagaggaaaagggaaaggcaagaattccaggtcaaagtctagatcgaagggtgatggcaa 17933181  T
Q  225 taaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgga 303  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||| |||||||||    
T  17933182 taaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtccggaaagaaagggcaatgga 17933260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 28456844 - 28456527
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||| || || ||||  | ||||||||| |||||| ||||||| ||     
T  28456844 ctttgataatttcaaggatacaatgctttatggcaaagagggcactagcactttggaggatgtccaagtggttttgagaaccaaagagctaaccaaatta 28456745  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagt 202  Q
    || |||||||||||||||||| ||| |||||||||||| ||||| |||  |||||||||||| | ||||||||  |||| ||||||||| ||||||||||    
T  28456744 aaggagttgaaggttgatgatagtgaagaaggcttgaatgtctcgagggggagaagtgaaaatagaggaaatgggaaagacaagaattctaggtcaaagt 28456645  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
     ||||| |  |||||  |||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| | ||  | || |||||    
T  28456644 ataggtcgaggggtggtggtaataaaacaaagtacaaattttttatttgtcacaatctaggtcacttcaagaatgattgtcctgagagggaaggaaatgg 28456545  T
Q  303 aagtgatagttcatccgt 320  Q
    ||||| ||||||||||||    
T  28456544 aagtggtagttcatccgt 28456527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 19348563 - 19348426
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  19348563 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 19348464  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  19348463 aaggacatgagggttgatgaaggtagtgaaggcttgaa 19348426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 25402923 - 25402799
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaagg 116  Q
    |||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||| ||||| || || || ||||||||||| || |||||||    
T  25402923 aaggataccatcctttatggtaaggagggcactactactttggaagaggtccaagcggctttaagaaccaaggaattgaccaagttcaaggacttgaagg 25402824  T
Q  117 ttgatgattgtggagaaggcttgaa 141  Q
    |||||||  || | |||||||||||    
T  25402823 ttgatgaaggtagtgaaggcttgaa 25402799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 10446247 - 10446375
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| ||| |  |||||| | || || ||||| ||||||||||  || || || ||||||||||| || |||    
T  10446247 tttcaaggataccatcctttatggtaaggagggcaccactactttgaaggaggtccaagcggctttgagaatcaaggaattgaccaagttcaaggacttg 10446346  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    ||||||||| |  |||| |||||||||||    
T  10446347 aaggttgataaaggtggtgaaggcttgaa 10446375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 35217293 - 35217206
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||||||||||||||| || || || |||||||    
T  35217293 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcagctttgagaaccaaggatttgaccaagt 35217206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 36560464 - 36560377
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  36560464 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 36560377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 16756602 - 16756321
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  16756602 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 16756503  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  16756502 aaagagttgaaggttgatgatagtggagaaggcttgaatatctcaagggggagaagtcacaacaaaggaaaagggaaaggcaagaattccaggtcaaagt 16756403  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  16756402 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtcc 16756321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 28891603 - 28891920
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  28891603 ctttgagaatttcaaggatactatgctttatggcaaagagagcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 28891702  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||| | | |||| ||| ||| | ||| |||||||||||||||||||||    
T  28891703 aaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaaatcagaacagaggaaaagggaaaggcaagaattccaggtcaaagt 28891802  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||  | ||||| | ||||||    
T  28891803 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcacttcaagaaggattgtccagagagaaaggacaatgg 28891902  T
Q  303 aagtgatagttcatccgt 320  Q
    | ||| || |||||||||    
T  28891903 aggtggtaattcatccgt 28891920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 28328747 - 28329028
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  28328747 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaaccaaagagttaaccaagttc 28328846  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||| | |||| ||| ||| | ||| |||||||||||||||||||||    
T  28328847 aaagagttgaaggttgatgatagtggagaaggcttgaatatctcaagggggagaagtcacaacaaaggaaaagggaaaggcaagaattccaggtcaaagt 28328946  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  28328947 ctaggtcgaagggtgatggcaataaaacacagtacaaatgttttatttgtcataatccaggtcactttaagaaggattgtcc 28329028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 33033480 - 33033796
Alignment:
Q  5 tttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttca 104  Q
    ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||    
T  33033480 tttgagaatttcaaggatacaatgctttatggcaaagaaggcactatcactttggaggaagttcaagcagttttgagaaccaaagagttaaccaagatca 33033579  T
Q  105 aagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagtc 203  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||  ||||||| |||| | ||||||| | ||| |||||||||  |||||||||||    
T  33033580 aagagttgaaggttaatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaagaaaggaaatgggaaaggcaagaattttaggtcaaagtc 33033679  T
Q  204 taggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgga 303  Q
    |||||   ||||||  || ||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||  | ||||| |||||||||    
T  33033680 taggtccaagggtggtggcaataaaacacaatacaaatgttttatttgtcgcaatccaagtcacttcaagaaggattgtccggagagaaagggcaatgga 33033779  T
Q  304 agtgatagttcatccgt 320  Q
    |||| || | |||||||    
T  33033780 agtggtaatccatccgt 33033796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 15945497 - 15945811
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||| ||| || ||||||| |||    
T  15945497 ctttgagaatttcaagaatacaatgctttatggcaaagagggcactatcactttggaggaagtccaagcggctttgagaaccaaaaagctaaccaaattc 15945596  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagt 202  Q
    || |||||||||||| ||||| ||||||||||||||||  |||||||     | |||||||||| ||||||| | ||| |||| || |||| |||||||     
T  15945597 aaggagttgaaggttaatgatagtggagaaggcttgaatctctcaag---acggagtgaaaacagaggaaatgggaaaggcaaaaaatccaagtcaaagc 15945693  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    ||||||||  |||||  ||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| | ||| | ||||||||    
T  15945694 ctaggttgacgggtggtggtgataaaacaaagtacacatgttttatttgtcacactccaggtcacttcaagaaggattgtcctgagagatatggcaatgg 15945793  T
Q  303 aagtgatagttcatccgt 320  Q
    ||||| ||||||||||||    
T  15945794 aagtggtagttcatccgt 15945811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 65 - 320
Target Start/End: Complemental strand, 26269587 - 26269331
Alignment:
Q  65 gttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaa 164  Q
    ||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||    
T  26269587 gttcaagaagctttgagaaccaaagagttgatcaagttcaaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaa 26269488  T
Q  165 acacaggaaatgaaaaag-caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatg 263  Q
    ||| ||||||||  |||| ||||||||||||||||||||||||||   ||||||  |||||||||||   |||||||||||||||||||||||||| | |    
T  26269487 acagaggaaatgggaaagacaagaattccaggtcaaagtctaggtccaagggtggtggtaataaaacttggtacaaatgttttatttgtcacaatctagg 26269388  T
Q  264 tcacttcaagaaggattgtcctcatagaaacggcaatggaagtgatagttcatccgt 320  Q
    |||||||||||||||||||||  | ||||  ||||||||||||| || | |||||||    
T  26269387 tcacttcaagaaggattgtccagagagaatgggcaatggaagtggtaatccatccgt 26269331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 4819581 - 4819474
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||    
T  4819581 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcggctttaagaaccaaagagttaaccaagttc 4819482  T
Q  104 aaagagtt 111  Q
    ||||||||    
T  4819481 aaagagtt 4819474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 143 - 320
Target Start/End: Original strand, 21038408 - 21038586
Alignment:
Q  143 gtctcaaggaagagaagtgaaaacacaggaaatgaaaaag-caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaat 241  Q
    |||||||||  ||||||| |||||| |||||| |  |||| |||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||    
T  21038408 gtctcaagggggagaagtcaaaacagaggaaaagggaaaggcaagaattccaggtcaaagtctaggtcgaagggtgatggaaataaaacatagtacaaat 21038507  T
Q  242 gttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatggaagtgatagttcatccgt 320  Q
    |||||||||| || |||||| |||||||||||||||||||| |  | ||||| ||||||||| ||| || | |||||||    
T  21038508 gttttatttgccataatccaggtcacttcaagaaggattgtacggagagaaagggcaatggaggtggtaatccatccgt 21038586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 18853973 - 18854101
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    ||||| |||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||    
T  18853973 tttcagggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 18854072  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  |||| |||||||||||    
T  18854073 aaggttgatgaaggtggtgaaggcttgaa 18854101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 31577618 - 31577530
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||| ||||| ||||| ||||||||||| | |||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||    
T  31577618 tttcaaagatactatgctatatggcaaagaaggcactattaccttggaagaagttcaagcggctttgagaaccaatgagttaaccaagt 31577530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 10685065 - 10685202
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  10685065 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 10685164  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  10685165 aaggacatgagggttgatgaaggtagtgaaggcttgaa 10685202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 35744676 - 35744539
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  35744676 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 35744577  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  35744576 aaggacatgagggttgatgaaggtagtgaaggcttgaa 35744539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 26300615 - 26300487
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||    
T  26300615 tttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaatgaattgaccaagttcaaggacttg 26300516  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    ||| |||||||  || | |||||||||||    
T  26300515 aagattgatgaaggtagtgaaggcttgaa 26300487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 41366270 - 41366174
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    |||||||| ||||| ||||||||| | | |||  |||| ||||| ||||||||||| ||||||||||| || ||||| ||||||| |||||| ||||    
T  41366270 aaggataccatgctctatggcaaaaaaggcaccgtcaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagtccaaagacttga 41366174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 15069578 - 15069665
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  15069578 ttcaaagataccatgctctatggcaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 15069665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 17848536 - 17848624
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||||||  |||||||||||| || | | |||| |||| ||||| ||||||||||| ||||||||||| || |||  ||||||||    
T  17848536 tttcaaggatatcatgctttatggctaaaaaggcactgtcaccttggaagaagttcaagctgctttgagaaccaaggagcaaaccaagt 17848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 23800327 - 23800455
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| ||| |  |||||||| || || ||| | ||||||||||| ||  | || ||||||||||| || |||    
T  23800327 tttcaaggataccatcctttatggtaaggagggcaccactactttggaggaggtccaaacggctttgagaaccaagaaattgaccaagttcaaggacttg 23800426  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    || ||||||||  |||| |||||||||||    
T  23800427 aaagttgatgaaggtggtgaaggcttgaa 23800455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 4732546 - 4732633
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||| ||||||| | |||| |||| ||||| ||||||||||| ||||| | ||| || ||||| |||||||    
T  4732546 ttcaaggataccatgctctatagcaaagaaggcactgtcaccttggaagaagttcaagcggctttaaaaaccaaggagttgaccaagt 4732633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 27827996 - 27828083
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  27827996 ttcaaagataccatgctatatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 27828083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 34255785 - 34255698
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||  ||||| ||||||||||| | |||| |||| ||||| ||||||||||  ||||| ||||| || ||||| |||||||    
T  34255785 ttcaaggatatcatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagtggctttaagaaccaaggagttgaccaagt 34255698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 43080613 - 43080700
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  43080613 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 43080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 28314981 - 28314855
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    |||||| |||| |||||  |||| ||||| || | | |||||||||| ||||| |||||||   ||||||| || |  ||||||||||| || |  ||||    
T  28314981 ttcaagaataccatgctcaatgggaaagaagatattgtcactttggaggaagtccaagcagagctgagaactaaggcattaaccaagttgaagggcttga 28314882  T
Q  114 aggttgatgattgtggagaaggcttga 140  Q
    ||||||||||| |||| ||||||||||    
T  28314881 aggttgatgatagtggtgaaggcttga 28314855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 5591776 - 5591849
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaaga 90  Q
    |||||||| ||||| ||||||||||| | |||  |||| ||||| ||| ||||||| ||||||||||| |||||    
T  5591776 aaggataccatgctctatggcaaagaaggcaccgtcaccttggaagaaattcaagcggctttgagaaccaaaga 5591849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 178; Significance: 9e-96; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 17164 - 17481
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| || |||||||||    
T  17164 ctttgagaatttcaaggatactatgctctatggcaaagagggcactattactttggaggaagttcaagcagctttgagaaccaaagaattgaccaagttc 17263  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||| ||| ||| | ||| |||||||||||||||||||||    
T  17264 aaagatttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcaaaacagaggaaaagggaaaggcaagaattccaggtcaaagt 17363  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | ||||||  | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||| ||||||||    
T  17364 ctaggtcgaagggtggtgataataaaacacagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtccggagagaaagggcaatgg 17463  T
Q  303 aagtgatagttcatccgt 320  Q
    ||||| || | |||||||    
T  17464 aagtggtaatccatccgt 17481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 15313157 - 15313438
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||| |||||||| |||||||||    
T  15313157 ctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcaactttgataaccaaagagttgaccaagttc 15313256  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacagg-aaatgaaaaagcaagaattccaggtcaaagt 202  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||  ||||| | |||||| ||| ||| | ||| |||||||||||| ||||||||    
T  15313257 aaagacttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaaatcaaaacagaggaaaagggaaaggcaagaattccaagtcaaagt 15313356  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcc 284  Q
    |||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15313357 ctaggtcgaagggtgatggcaataaaacaaagtacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtcc 15313438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 26 - 320
Target Start/End: Original strand, 4559067 - 4559362
Alignment:
Q  26 atgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgatt 125  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||     
T  4559067 atgctttatggaaaagagggcactatcactttggaggaagttcaagcggctttgagaaccaaagagttaaccaagttcaaagagttgaaggttaatgata 4559166  T
Q  126 gtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagtctaggttgtagggtgacggtaa 224  Q
    |||||||||||||||| |||||||||  ||||||| |||||| ||||||| | ||| |||||||||||| |||||||||||||| | ||||||  |||||    
T  4559167 gtggagaaggcttgaatgtctcaagggggagaagtcaaaacagaggaaatgggaaaggcaagaattccatgtcaaagtctaggtcgaagggtgttggtaa 4559266  T
Q  225 taaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatggaagtgatagttcatccgt 320  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||| ||||||||||||| || | |||||||    
T  4559267 taaaacacaatacaaatgttttatttgtcacaatccaggtcacttcaagaaggattgtccagagagaaagggcaatggaagtggtaatccatccgt 4559362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 16633329 - 16633642
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||  ||||| |||||||||| |||||||||||||| |||    
T  16633329 ctttgagaatttcaagaatacaatgctttatggcaaagagggcactatcactttggaggaagtctaagcaactttgagaaccaaagagttaaccaaattc 16633428  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaaat-gaaaaagcaagaattccaggtcaaagt 202  Q
    || |||||||||||||||||| ||||| |||||||||| |||||||||  |||||||||||||  ||||||| ||||  ||||||||| || ||||||||    
T  16633429 aaggagttgaaggttgatgatagtggataaggcttgaatgtctcaagggggagaagtgaaaactgaggaaatagaaatggcaagaatttcatgtcaaagt 16633528  T
Q  203 ctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaagaaggattgtcctcatagaaacggcaatgg 302  Q
    |||||| | |||||   |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||  | ||||| ||||||||    
T  16633529 ctaggtcgaagggttgtggtaataaaataaagtacaaatgttttatttctcacaatccaggtcacttcaagaaagattgtccaaagagaaagggcaatgg 16633628  T
Q  303 aagtgatagttcat 316  Q
    ||||| ||||||||    
T  16633629 aagtggtagttcat 16633642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 5147178 - 5147050
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| || |||| |||||  |||||||| ||||| ||||| ||||||||||| ||| | || ||||||||||| || |||    
T  5147178 tttcaaggataccatcctttatggtaaggagggcactactactttggaggaagtccaagcggctttgagaaccaaacaattgaccaagttcaaggacttg 5147079  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  |||| |||||||||||    
T  5147078 aaggttgatgaaggtggtgaaggcttgaa 5147050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 21549539 - 21549627
Alignment:
Q  53 actttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||| || ||||||||| |||||||||| || ||||||||||||||||| || ||||||||||| ||  |||| |||||||||||    
T  21549539 actttggaggaggttcaagcacctttgagaaccaaggagttaaccaagttcaaggatttgaaggttgaagaaagtggcgaaggcttgaa 21549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 9225205 - 9225324
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || |||||||||    
T  9225205 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttc 9225304  T
Q  104 aaagagttgaaggttgatga 123  Q
    || ||  |||||||||||||    
T  9225305 aatgacatgaaggttgatga 9225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 5136983 - 5137067
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  5136983 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 5137067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 7123599 - 7123683
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  7123599 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 7123683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 8394309 - 8394393
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    |||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  8394309 aaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 8394393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 4588840 - 4588939
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttga 113  Q
    ||||||||||| ||||| ||| ||||| | |||||| ||||  || | ||||||||||| ||||||||||| || ||||| ||||||| |||||| ||||    
T  4588840 ttcaaggataccatgctctattgcaaataagacactgtcaccatgaacgaagttcaagcggctttgagaaccaaggagttgaccaagtccaaagacttga 4588939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 5206939 - 5206856
Alignment:
Q  18 aggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||| || || ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||| ||  |||| |||||||    
T  5206939 aggataccatcctctatggaaaagaagacactatcaccttggaggaagtccaagcagctttaagaaccaagaagttgaccaagt 5206856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 5872703 - 5872782
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagtt 93  Q
    ||||||||||  ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || |||||    
T  5872703 ttcaaggatatcatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagtt 5872782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 22782060 - 22781973
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  22782060 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 22781973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 38984026 - 38983911
Alignment:
Q  26 atgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgatt 125  Q
    ||||||||||| ||| ||| || |||||| ||||| || || ||||| |  ||||||||||| ||||||  ||||| ||| || ||||| |||||||||     
T  38984026 atgctttatggtaaatagggcattatcaccttggaagaggtccaagcggtgttgagaacgaatgagttactcaagtccaatgacttgaatgttgatgata 38983927  T
Q  126 gtggagaaggcttgaa 141  Q
    ||||  ||||||||||    
T  38983926 gtggtaaaggcttgaa 38983911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 52094642 - 52094555
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | || | |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  52094642 ttcaaagataccatgctctatggcaaagaaggcattgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 52094555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 12741006 - 12740925
Alignment:
Q  20 gatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| || ||||| |||||||    
T  12741006 gataccatgctctatggcaaagaaggcactgtcacctttgaagaagttcaagcggctttaagaaccaaggagttgaccaagt 12740925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 12749212 - 12749131
Alignment:
Q  20 gatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| || ||||| |||||||    
T  12749212 gataccatgctctatggcaaagaaggcactgtcacctttgaagaagttcaagcggctttaagaaccaaggagttgaccaagt 12749131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 74 - 284
Target Start/End: Complemental strand, 50478 - 50267
Alignment:
Q  74 gctttgagaacgaaagagttaaccaagttcaaagagttgaaggttgatgattgtggagaaggcttgaaagtctcaaggaagagaagtgaaaacacaggaa 173  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||| | |||| |||||    
T  50478 gctttgagaaccaaagagttaaccaagttcaaagagttgaaggttgatgatagtggagaaggcttgaatgtctcaagggggagaagtcagaacagaggaa 50379  T
Q  174 atgaaaaag-caagaattccaggtcaaagtctaggttgtagggtgacggtaataaaacaaagtacaaatgttttatttgtcacaatccatgtcacttcaa 272  Q
    | |  |||| |||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||| |||| |||||| ||||||||||    
T  50378 aagggaaaggcaagaattccaggtcaaagtctaggtcgaagggtgatggcaataaaacacagtacaaatgttttattagtcataatccaggtcacttcaa 50279  T
Q  273 gaaggattgtcc 284  Q
    ||||||||||||    
T  50278 gaaggattgtcc 50267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 1784 - 1656
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| || |||||||| ||||||| ||| |  |||||||| || || ||||| |||| |||||| || || || ||||||||||| || |||    
T  1784 tttcaaggataccatcctttatggtaaagagggcaccactactttggaggaggtccaagcggcttagagaaccaatgaattgaccaagttcaaggacttg 1685  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  |||| |||||||||||    
T  1684 aaggttgatgaaggtggtgaaggcttgaa 1656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 678 - 815
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || ||| |||||    
T  678 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgacccagttc 777  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  |||||||||||||  || | |||||||||||    
T  778 aaggacatgaaggttgatgaaggtagtgaaggcttgaa 815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 15110 - 15247
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  15110 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaagaattgaccaagttc 15209  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  15210 aaggacatgagggttgatgaaggtagtgaaggcttgaa 15247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 149756 - 149893
Alignment:
Q  4 ctttgagagtttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttc 103  Q
    |||||||  |||||||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| ||||| || |||||||||    
T  149756 ctttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaactaaagaattgaccaagttc 149855  T
Q  104 aaagagttgaaggttgatgattgtggagaaggcttgaa 141  Q
    || ||  ||| |||||||||  || | |||||||||||    
T  149856 aaggacatgagggttgatgaaggtagtgaaggcttgaa 149893  T

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Target: scaffold0842 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 4004 - 4132
Alignment:
Q  13 tttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttg 112  Q
    |||||||||||| ||  ||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||    
T  4004 tttcaaggataccatcttttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttg 4103  T
Q  113 aaggttgatgattgtggagaaggcttgaa 141  Q
    |||||||||||  || | |||||||||||    
T  4104 aaggttgatgaaggtagtgaaggcttgaa 4132  T

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Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 18753 - 18877
Alignment:
Q  17 aaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagttcaaagagttgaagg 116  Q
    |||||||| || |||||||| || |||| |||||  |||||||| || || ||||| ||||||||||| || || || ||||||||||| || |||||||    
T  18753 aaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaacgaattgaccaagttcaaggacttgaagg 18852  T
Q  117 ttgatgattgtggagaaggcttgaa 141  Q
    |||||||  || | |||||||||||    
T  18853 ttgatgaaggtagtgaaggcttgaa 18877  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 115491 - 115578
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||||||||| ||||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||    
T  115491 ttcaaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 115578  T

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Target: scaffold1899 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 580 - 667
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||||| || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  580 ttcaaagataccatgctctatggcaaggaaggcactattaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 72840 - 72753
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| ||||||||||| | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  72840 ttcaaagataccatgctctatggcaaagaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 72753  T

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Target: scaffold1908 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1908
Description:

Target: scaffold1908; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 254 - 338
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaacca 98  Q
    ||||||||||| ||||| |||||||||||   || | |||| ||||| ||||||||| || |||||||||| |||||||| ||||    
T  254 ttcaaggataccatgctctatggcaaagaacgcagtgtcaccttggaagaagttcaatcaactttgagaaccaaagagttgacca 338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 23082 - 23169
Alignment:
Q  14 ttcaaggatacaatgctttatggcaaagaggacactatcactttggatgaagttcaagcagctttgagaacgaaagagttaaccaagt 101  Q
    ||||| ||||| ||||| |||||||| || | |||| | || ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  23082 ttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 23169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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