View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_7 (Length: 541)
Name: NF9954_low_7
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 526
Target Start/End: Complemental strand, 2869924 - 2869401
Alignment:
| Q |
7 |
gattaggctcctgactgatactgatagtgcttagagtttcagattccttttccacaacaggggaaagctcttcaggaacagggtccagaagagactgtag |
106 |
Q |
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| T |
2869924 |
gattaggctcctgactgatactgatcgtgcttagagtttctgaatccttttccacaacaggggaaagctcttcaggaacagggtccagaagagactgtag |
2869825 |
T |
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| Q |
107 |
ctgtggtgattcagttttgttgatgctggaaccttctgattctcccatgacttgttctgtggatatatacacagtgcaacctgaaaacttagttatgaca |
206 |
Q |
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| T |
2869824 |
ctgtggtgattcagttttgttgatgctggaaccttctgattctcccatgacttgttctgtggatatatacacagtgcaacctgaaaacttagttatgaca |
2869725 |
T |
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| Q |
207 |
agggtaggtgaatgaatattatgatgatttagaattgaatatatatagcaactaagaaaagaggaaacatggtactat----aatggttccttgttggaa |
302 |
Q |
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| T |
2869724 |
agggtaggtgaatgaatattatgatgatttagaattgaatatatatagcaactaagaaaagaggaaacatggtactataatgaatggttccttgttggaa |
2869625 |
T |
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| Q |
303 |
tttggaaataacaaagtagttgtggtaattaagtaacttgacaggttggattttgtttggcaaacgtaggagagtagagaagtttcacgtttgggccaag |
402 |
Q |
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| T |
2869624 |
tttggaaataacaaagtagtggtggtaattaagtaacttgacagggtggattttgtttggcaaacgtaggagagtagagaagtttcacgtttgggccacg |
2869525 |
T |
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| Q |
403 |
acaaatatgtgcggatggatattcacggtcttgtgttatttttctgtagttagttactacctatgttttatgacatctgtcaaaacaactatgtctaatg |
502 |
Q |
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| T |
2869524 |
acaaatatgtgcagatggatattcacggtcttgtgttatttttctgtagttagttactacctatgttttatgacatctgtcaaaacaactatgtctaatg |
2869425 |
T |
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| Q |
503 |
atattgatattgatatttatttct |
526 |
Q |
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| T |
2869424 |
atattgatattgttatttatttct |
2869401 |
T |
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