View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_9 (Length: 527)
Name: NF9954_low_9
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_9 |
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| [»] scaffold0519 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 9e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36882705 - 36882957
Alignment:
| Q |
1 |
agtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttcttagtttgggagaactcaaaagttg-a |
99 |
Q |
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| T |
36882705 |
agtagaagaaatcgaggactttgggaggggggagctttggggaatttatttttctttataatacaaaatcttcttaatttgggagaacttaaaagttgta |
36882804 |
T |
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| Q |
100 |
ttgaacaaagatttgagagggtttgcagggcttgga-taaattcaaacattaaaaatttaaaatgcctatttactccatta-ttttcaggtgaagaatat |
197 |
Q |
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| T |
36882805 |
ctgaacaaagatttgagagggtttgcagggcttggacaaaattcaaagattaaaaatttaaaatgtctatttactccattacttgtaaagtgaagaatat |
36882904 |
T |
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| Q |
198 |
gcatgtagttgattttagaaacttccatgaagcaaaagttttactaaaatgtt |
250 |
Q |
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| T |
36882905 |
gcatgtagatgatttgagaaacttccatgaagcaaaagttttactaaaatgtt |
36882957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 341 - 527
Target Start/End: Original strand, 36883000 - 36883186
Alignment:
| Q |
341 |
atataaaagtttgagtattgtgcattactcaaattttatctcttccattgaaaatatttaaatatatatgttggttcatttgcnnnnnnnnnnnnacctt |
440 |
Q |
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| T |
36883000 |
atataaaagtttgagtattgtgcactactcaaattttatctcttccaatgaaaatgtttgaatatatatgttggttcatttgctttttcttttttacctt |
36883099 |
T |
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| Q |
441 |
ggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagac |
527 |
Q |
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| T |
36883100 |
ggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagac |
36883186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 526
Target Start/End: Original strand, 36893101 - 36893188
Alignment:
| Q |
439 |
ttggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaaga |
526 |
Q |
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| T |
36893101 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaaga |
36893188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0519 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7451 - 7521
Alignment:
| Q |
1 |
agtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttc |
73 |
Q |
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| T |
7451 |
agtagaataaatagaggacatt--gaggggaaagcttcggggaatttatttttcttcataatacaaaatcttc |
7521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11229368 - 11229298
Alignment:
| Q |
1 |
agtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttc |
73 |
Q |
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||||||| |||| |||||| || |||||| |||||||||||||||||||||||| || ||||||||||||| |
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| T |
11229368 |
agtagaataaatagaggacatt--gaggggaaagcttcggggaatttatttttcttcataatacaaaatcttc |
11229298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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