View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9955_high_1 (Length: 505)
Name: NF9955_high_1
Description: NF9955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9955_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 3572472 - 3571982
Alignment:
| Q |
1 |
ttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572472 |
ttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagaga |
3572373 |
T |
|
| Q |
101 |
gagacattgttgaagcagccatggtagaattttagtgtttactaagtaaacaaataaatatctttattggcaatgttgatgatggctatattgaatgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572372 |
gagacattgttgaagcagccatggtagaattttagtgtttactaagtaaacaaataaatatctttattggcaatgttgatgatggctatattgaatgtgt |
3572273 |
T |
|
| Q |
201 |
tatgttatggtgttatttatatgttgttttcaacaagataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgaacatt |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3572272 |
tatggtatggtgttatttatatgttgttttcaacaagataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgagcatt |
3572173 |
T |
|
| Q |
301 |
acagttgcttctcaaaccacataccactctataaattattttcttcctttcccaaacatatcaaatatccac---attttaaaataatatcattaaatat |
397 |
Q |
| |
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||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||| |
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| T |
3572172 |
acagttgcttctcaaaccacatatcactttaaaaattattttcttcctttcccaaacatatcaaatatccacaataatatataataatatcattaaatat |
3572073 |
T |
|
| Q |
398 |
ctttttcatccaatgagagtttgccaattgtaatttctggataggatgatcaataacgtacaaattcatgcatataacggtatataattat |
488 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572072 |
ctttttcatccaataagagtttgccaattgtaatttctggataggatgatcaataacgtacaaattcatgcatataacggtatataattat |
3571982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 3585462 - 3585594
Alignment:
| Q |
1 |
ttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||| ||||||||| |||| |
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| T |
3585462 |
ttcttggtggttgttttcctcatggtgattcttcccatcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgaga |
3585561 |
T |
|
| Q |
101 |
gagacattgttgaagcagccatggtagaatttt |
133 |
Q |
| |
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||| |||||||||||||||||| |||| ||||| |
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| T |
3585562 |
gagccattgttgaagcagccattgtagtatttt |
3585594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3575756 - 3575635
Alignment:
| Q |
1 |
ttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagaga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
3575756 |
ttcttgttggttgttttcctcatggtgattcttcccatcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagaga |
3575657 |
T |
|
| Q |
101 |
gagacattgttgaagcagccat |
122 |
Q |
| |
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||| ||||||||| | |||||| |
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|
| T |
3575656 |
gagccattgttgatgtagccat |
3575635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 3563777 - 3563623
Alignment:
| Q |
1 |
ttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagaga |
100 |
Q |
| |
|
||||||||||||| ||||||||| || | |||||||| ||| |||| | || || ||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
3563777 |
ttcttggtggttgctttcctcattgtgactcttcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagaga |
3563678 |
T |
|
| Q |
101 |
gagacattgttgaagcagccatggtagaattttagtgtttactaagtaaacaaat |
155 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| | ||||||||||||||||| |
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|
| T |
3563677 |
gagacattgttgaagccgccattttagtattttattccttactaagtaaacaaat |
3563623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 3569425 - 3569276
Alignment:
| Q |
1 |
ttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagaga |
100 |
Q |
| |
|
||||||||||||||||||||||| || | |||||||| ||| |||| |||| || |||||||| |||||||||||||| || |||||||||||||||| |
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| T |
3569425 |
ttcttggtggttgttttcctcattgtgactcttcccaccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagaga |
3569326 |
T |
|
| Q |
101 |
gagacattgttgaagcagccatggtagaattttagtgtttactaagtaaa |
150 |
Q |
| |
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| |||||||||||||||||||| || | ||||| || |||||||||||| |
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|
| T |
3569325 |
gggacattgttgaagcagccattgtggtatttttttgcttactaagtaaa |
3569276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 13275669 - 13275581
Alignment:
| Q |
41 |
caaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaa |
129 |
Q |
| |
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|||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
13275669 |
caaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccattgtagaa |
13275581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 3575500 - 3575427
Alignment:
| Q |
249 |
gtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagttgcttctcaaaccacata |
323 |
Q |
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|||||||||||||||||||||| | | | | ||||||||||||| || ||||||| || | |||||||||||||| |
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| T |
3575500 |
gtccatatcttatgaaatctatatct-tgattttctattggtttggagcattacacttacatctcaaaccacata |
3575427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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