View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9955_high_8 (Length: 207)
Name: NF9955_high_8
Description: NF9955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9955_high_8 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 51524709 - 51524503
Alignment:
| Q |
1 |
ctttgtgtcctcatctctgatccacgaaggaaatcgatccttgttggttgcgagttgatcatcattgccggaaactacttcaccaagaagattcgccacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51524709 |
ctttgtgtcctcatctctgatccacgaaggaaatcgatccttgttggttgcgagttgatcatcattgccggaaactacttcaccaagaagattcgccacc |
51524610 |
T |
|
| Q |
101 |
aaggacatcacatgatcgagaccagaggatataagaccctttacaattgaaccttctaatccttctatacatgtgtctggatacacaagaacagcactca |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51524609 |
aaggacattacatgatcgagaccagaggatataagaccctttacaattgaaccttctaatccttctatacatgtgtctggatacacaagaacagcactca |
51524510 |
T |
|
| Q |
201 |
gccatgt |
207 |
Q |
| |
|
||||||| |
|
|
| T |
51524509 |
gccatgt |
51524503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 51530742 - 51530687
Alignment:
| Q |
152 |
ccttctaatccttctatacatgtgtctggatacacaagaacagcactcagccatgt |
207 |
Q |
| |
|
|||| ||||||||||| ||| ||||||| || ||||||||||||||| |||||||| |
|
|
| T |
51530742 |
ccttgtaatccttctaaacaagtgtctgtattcacaagaacagcactgagccatgt |
51530687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University