View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9955_low_2 (Length: 492)
Name: NF9955_low_2
Description: NF9955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9955_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 13673979 - 13673511
Alignment:
| Q |
16 |
aaattattattagtgtaagtattgtgtccaatgtatgtgtcagcgcttcatagaaaaggatgcttattttcttacttgtttcatgaatggccgcttggag |
115 |
Q |
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| T |
13673979 |
aaattattattagtgtaagtattgtgtccaatgtatgtgtcagcgcttcatagaaaaggatgcttattttcttacttgtttcatgaatggccgcttggag |
13673880 |
T |
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| Q |
116 |
gatgaatggtggacgcacaaggaagctgtcttcatggcacggttcatttcggtgggatcatatttctcttctaatctaggatctgctagctcttggacat |
215 |
Q |
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| T |
13673879 |
gatgaatggtggacgcacaaggaagctgtcttcatggcacggttcatttcggtgggatcatatttctcttctaatctaggatctgctagctcttggacat |
13673780 |
T |
|
| Q |
216 |
tttttgagtcaagaagtggcttggcctgacaatagtagatcatgttcatatcttgtcacactcaaattaaattaaatagtaaataaacttcgtcagaaca |
315 |
Q |
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| T |
13673779 |
tttttgagtcaagaagtggcttggcctgacaatagtagatcatgttcatatcttgtcacactcaaattaaattaaatagtaaataaacttcgtcagaaca |
13673680 |
T |
|
| Q |
316 |
ttgcaacctattgcattcacctagaagctataatataaaaatctaagtactgcttacccaaatcacaagactttgcttactatcggaatcaactgcacga |
415 |
Q |
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| T |
13673679 |
ttgcaacctattgcattcacctagaagctataatataaaaatctaagtactgcttacccaaatcacaagactttgcttactatcggaatcaactgcacga |
13673580 |
T |
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| Q |
416 |
cgacctgttatgagttcgagtagtaaaacaccgaatgcgaatacatctgtcttctcatccacaacacca |
484 |
Q |
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| T |
13673579 |
cgacctgttatgagttcgagtagtaaaacgccgaatgcgaatacatctgtcttctcatccacaacacca |
13673511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 479
Target Start/End: Complemental strand, 28532605 - 28532494
Alignment:
| Q |
368 |
cttacccaaatcacaagactttgcttactatcggaatcaactgcacgacgacctgttatgagttcgagtagtaaaacaccgaatgcgaatacatctgtct |
467 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| |||||||||||||| | |||||| |||| || || || ||||| || ||||| |||| |
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| T |
28532605 |
cttacccaaatcacaagactttgcttgctatttgaatcaaccgcacgacgacctgtcaagagttcaagtaacaataccccaaatgcaaaaacatcagtct |
28532506 |
T |
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| Q |
468 |
tctcatccacaa |
479 |
Q |
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| T |
28532505 |
tctcatccacaa |
28532494 |
T |
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