View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9955_low_3 (Length: 457)
Name: NF9955_low_3
Description: NF9955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9955_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 108 - 441
Target Start/End: Complemental strand, 51900795 - 51900466
Alignment:
| Q |
108 |
gtgagagcatgacctgttgttgtgttgtcatcatagttataagcgaatttcaaacattgatcaaagtctagttcacatgatacacacctcaccataaaac |
207 |
Q |
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| T |
51900795 |
gtgagagcatgacctgttgt---gttgtcatcatagttataaacgaatttcaaacattgatcaaaatctagttcacatgataaacacctcaccataaaac |
51900699 |
T |
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| Q |
208 |
tcacatcatattaggcagttttatnnnnnnnnnnnnnnnnnntatacttgtacttgggggtttatggtgaaataaaatgatgatccacatgttgtttcac |
307 |
Q |
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| T |
51900698 |
tcacatcatattaggcagttttataaataaaaaaatatata-tatacttgtacttcggggtttatggtgaaataaaatgatgatccacatgttgtttcac |
51900600 |
T |
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| Q |
308 |
aaaattttccggaaacgtgtcaaactaagcggataattataattagatacttgaaacgtgatattgactgtttaaattttaaaacaactgctacctatat |
407 |
Q |
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| T |
51900599 |
aaaattttccggaaacgtgtcaaactaagcggataattataattagatacttgaaacgtgatattgactgtttaaattttaaaacaactgctacctatat |
51900500 |
T |
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| Q |
408 |
atgtatcaaattagttgatgattttgataatata |
441 |
Q |
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| T |
51900499 |
atgtatcaaattagttgatgattttgataatata |
51900466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 51900974 - 51900902
Alignment:
| Q |
8 |
ttggtgttggaccatgatttattgaataatattttgtatttattgaaactcaatccaatactttttgatatta |
80 |
Q |
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| T |
51900974 |
ttggtgttggaccatgatttattgaataatattttgtatttattgaaactcaatccaatactttttgatatta |
51900902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 51900843 - 51900808
Alignment:
| Q |
78 |
ttaaccaacagagattgagtcattgtcttagtgaga |
113 |
Q |
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| T |
51900843 |
ttaaccaacaaagattgagtcattgtcttagtgaga |
51900808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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