View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9955_low_5 (Length: 393)
Name: NF9955_low_5
Description: NF9955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9955_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 26966876 - 26967241
Alignment:
| Q |
18 |
caaaatgatttgaaggaggaggatttgccagtgacgacgacgatgaagacatcgagtttgtgttcctcttgttagccacaggcttaggatgattatgact |
117 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26966876 |
caaaatgatttgaaggaggaggatttgcatgtgacaacgacgatgaagacatcgagtttgtgttcctcttgttagccacaggcttaggatgattatgact |
26966975 |
T |
|
| Q |
118 |
acctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtgcatttataataacttcttgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26966976 |
acctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtgcatttataataacttcttgga |
26967075 |
T |
|
| Q |
218 |
ttttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatcttctactaaggatctgaacttgtggctgtgattgataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26967076 |
ttttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatcttctactaaggatctgaacttgtggttgtgattgataat |
26967175 |
T |
|
| Q |
318 |
tgttgtaatttgattgtgaaccactcttgttgtagttattttgttcactagtagaattactctctg |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26967176 |
tgttgtaatttgattgtgaaccactcttgttgtagttattttgttcactagtagaattactctctg |
26967241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 97 - 281
Target Start/End: Original strand, 31615255 - 31615439
Alignment:
| Q |
97 |
aggcttaggatgattatgactacctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtg |
196 |
Q |
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||||||||||||||||||| |||| || |||||||||||||||| |||||| || | ||||||||||| |||||||| ||||| |||||||| ||| |
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| T |
31615255 |
aggcttaggatgattatgagtacccttataaactatctcagtaacttgtccctcaattgatctctcaactttcttctttgtaggacagttagggtatgtg |
31615354 |
T |
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| Q |
197 |
catttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatcttc |
281 |
Q |
| |
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||||| || |||||||| |||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
31615355 |
catttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatcatcggatcttc |
31615439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 41271300 - 41271244
Alignment:
| Q |
221 |
tcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgat |
277 |
Q |
| |
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||||| ||||| || |||||||| ||||| |||| ||||||||||||||||| |||| |
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| T |
41271300 |
tcactccctttaacatgtttttgcccatactttcgccaattgtatccatcatttgat |
41271244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 3669370 - 3669194
Alignment:
| Q |
97 |
aggcttaggatgattatgactacctttgtaaactatctcagtaatttgtccatct---aaacccctctcaacttttttctttgttggacaattagggtaa |
193 |
Q |
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|||||||||||| |||||||| ||||| || ||||| | ||||||||||||||| ||| ||| |||||||| ||||| ||| ||| | || | | |
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| T |
3669370 |
aggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaactttcttcttcattgagcaaattggatta |
3669271 |
T |
|
| Q |
194 |
gtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatc |
270 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
3669270 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 26332446 - 26332628
Alignment:
| Q |
97 |
aggcttaggatgattatgactacctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtg |
196 |
Q |
| |
|
||||||||| || |||||| | || || || || || |||||||| |||||||| ||| ||||||| ||||| ||||| ||| ||||| || | ||| |
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| T |
26332446 |
aggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatccaaatccctctcgactttcttcttcattgagcaatttggattcgtg |
26332545 |
T |
|
| Q |
197 |
catttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatct |
279 |
Q |
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|| || |||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |
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| T |
26332546 |
cacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatcttccgatct |
26332628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 40471422 - 40471516
Alignment:
| Q |
178 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
272 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||| |||| || |||||||| ||||| || ||||||||||||||||| || |||||||||| |
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| T |
40471422 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
40471516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 30409086 - 30409182
Alignment:
| Q |
180 |
gacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctga |
276 |
Q |
| |
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||||||||| | ||| ||||| || || ||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
30409086 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctga |
30409182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 30395454 - 30395515
Alignment:
| Q |
209 |
cttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatc |
270 |
Q |
| |
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||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| |
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| T |
30395454 |
cttctcggatattcactgccttttacttgtttttggccatattttctccaattataaccatc |
30395515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 17665257 - 17665311
Alignment:
| Q |
233 |
acttgtttttgtccatattttctccaattgtatccatcatctgatcttctactaa |
287 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
17665257 |
acttgtttttgaccatattttctccaattgtattcatcatctgattttctgctaa |
17665311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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