View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9956_high_2 (Length: 476)

Name: NF9956_high_2
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9956_high_2
NF9956_high_2
[»] chr1 (22 HSPs)
chr1 (20-466)||(48041845-48042291)
chr1 (20-173)||(48049925-48050079)
chr1 (79-238)||(48055301-48055461)
chr1 (20-86)||(29812830-29812896)
chr1 (20-86)||(48040173-48040239)
chr1 (20-86)||(48049407-48049473)
chr1 (20-86)||(39972791-39972857)
chr1 (20-86)||(48054679-48054745)
chr1 (20-86)||(5126504-5126570)
chr1 (20-86)||(22908324-22908390)
chr1 (20-86)||(48033103-48033169)
chr1 (20-86)||(48034711-48034777)
chr1 (20-86)||(48035758-48035824)
chr1 (20-86)||(48041324-48041390)
chr1 (20-86)||(48050609-48050675)
chr1 (20-86)||(48053127-48053193)
chr1 (20-86)||(48055943-48056009)
chr1 (20-99)||(48036708-48036787)
chr1 (20-86)||(48042835-48042901)
chr1 (28-86)||(29813662-29813720)
chr1 (20-86)||(48048642-48048709)
chr1 (20-76)||(48054322-48054378)
[»] chr7 (4 HSPs)
chr7 (20-88)||(43920605-43920673)
chr7 (20-87)||(23780468-23780535)
chr7 (20-88)||(40706104-40706172)
chr7 (24-81)||(46064797-46064854)
[»] chr4 (3 HSPs)
chr4 (20-88)||(38393568-38393636)
chr4 (20-86)||(49152540-49152606)
chr4 (24-81)||(26929298-26929355)
[»] chr3 (7 HSPs)
chr3 (20-88)||(53107637-53107705)
chr3 (20-86)||(31125753-31125819)
chr3 (20-86)||(38930476-38930542)
chr3 (20-86)||(34974803-34974869)
chr3 (20-86)||(47565682-47565748)
chr3 (20-86)||(53682982-53683048)
chr3 (41-77)||(32170503-32170539)
[»] chr2 (7 HSPs)
chr2 (20-88)||(6801059-6801127)
chr2 (20-87)||(39990579-39990646)
chr2 (20-86)||(35926130-35926196)
chr2 (20-87)||(13327001-13327068)
chr2 (20-86)||(6796497-6796563)
chr2 (20-86)||(7181564-7181630)
chr2 (20-86)||(35920139-35920205)
[»] chr6 (6 HSPs)
chr6 (20-86)||(10754602-10754668)
chr6 (20-87)||(992447-992514)
chr6 (20-86)||(10750285-10750351)
chr6 (20-88)||(18613086-18613154)
chr6 (32-86)||(32678635-32678689)
chr6 (20-86)||(10748689-10748755)


Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Complemental strand, 48042291 - 48041845
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggttaggtgagatatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042291 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggttaggtgagatatat 48042192  T
Q  120 gacttcttgttactattaaaattgtttatgcatgccacatggtctgcagttgtaaagtaatttagcatgaaaatgaccagatctgcttatttggatacac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042191 gacttcttgttactattaaaattgtttatgcatgccacatggtctgcagttgtaaagtaatttagcatgaaaatgaccagatctgcttatttggatacac 48042092  T
Q  220 aattgttagttgttcttcaacatataacgtacccaacagaaactggctgctcttctcttgataatgaggccactggacgaagctaccgatctctaaggct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042091 aattgttagttgttcttcaacatataacgtacccaacagaaactggctgctcttctcttgataatgaggccactggacgaagctaccgatctctaaggct 48041992  T
Q  320 aacatgtttttctaggcaagatatcaaagagtcatttaatcatttagttggaggttcgacccctgattattgcgtaaagaaaaaacatcatttataagag 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  48041991 aacatgtttttctaggcaagatatcaaagagtcatttaatcatttagttggaggttcgacccctgattattgcataaagataaaacatcatttataagag 48041892  T
Q  420 atcatctcctgaaatgattctcggctaagttgagatatcagtctctg 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48041891 atcatctcctgaaatgattctcggctaagttgagatatcagtctctg 48041845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 48050079 - 48049925
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggttaggtgagatatat 119  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  48050079 attccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggttaggtgagatatat 48049980  T
Q  120 gacttcttg-ttactattaaaattgtttatgcatgccacatggtctgcagttgta 173  Q
    | ||||||| |||||||| ||| |||| |||||| ||||||||||||||||||||    
T  48049979 gtcttcttgtttactattgaaaatgttaatgcataccacatggtctgcagttgta 48049925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 48055461 - 48055301
Alignment:
Q  79 aaatgcccatattgaagtaagcatggttaggtgagatatatgacttcttgtt-actattaaaattgtttatgcatgccacatggtctgcagttgtaaagt 177  Q
    ||||||||||||||||||||||| ||||||||||||| |||| ||||||||| | || | |||||||| ||| || ||||||||||||||||||||  ||    
T  48055461 aaatgcccatattgaagtaagcaaggttaggtgagatctatgtcttcttgtttagtaatgaaattgttcatgaataccacatggtctgcagttgtattgt 48055362  T
Q  178 aatttagcatgaaaatgaccagatctgcttatttggatacacaattgttagttgttcttca 238  Q
    ||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  48055361 aatattgcatgaaaatgaccaaatctgcttatttggatacacaattgttggttgttcttca 48055301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 29812830 - 29812896
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29812830 attccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 29812896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48040239 - 48040173
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48040239 attccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48040173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48049473 - 48049407
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48049473 attccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48049407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 39972791 - 39972857
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972791 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48054745 - 48054679
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  48054745 attccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccc 48054679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 5126570 - 5126504
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5126570 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 5126504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 22908390 - 22908324
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22908390 attccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 22908324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48033169 - 48033103
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48033169 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48034777 - 48034711
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48034777 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48034711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48035824 - 48035758
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48035824 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48035758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48041390 - 48041324
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48041390 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48041324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48050675 - 48050609
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48050675 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48050609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48053193 - 48053127
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||    
T  48053193 attccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatgccc 48053127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48056009 - 48055943
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48056009 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48055943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 48036787 - 48036708
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaag 99  Q
    |||| ||||||| ||||| | |||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  48036787 attcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaatacccatcttgaagtaag 48036708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48042901 - 48042835
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||    
T  48042901 attcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48042835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 29813662 - 29813720
Alignment:
Q  28 aatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||    
T  29813662 aatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 29813720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48048709 - 48048642
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccacta-gaccaaatgccc 86  Q
    |||||||||||| |||| || ||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  48048709 attccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccc 48048642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 48054378 - 48054322
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactaga 76  Q
    |||| ||||||||||||| | ||||||||||||| |||||||||||||  |||||||    
T  48054378 attctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 43920673 - 43920605
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 88  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43920673 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 43920605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 23780535 - 23780468
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 87  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  23780535 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccca 23780468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 40706172 - 40706104
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 88  Q
    ||||||||||| |||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  40706172 attccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgcccat 40706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  24 cgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaa 81  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 38393568 - 38393636
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 88  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38393568 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 38393636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 49152540 - 49152606
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  49152540 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 49152606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  24 cgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaa 81  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 53107705 - 53107637
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 88  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53107705 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 53107637  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 31125819 - 31125753
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31125819 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 31125753  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 38930476 - 38930542
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930476 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 34974869 - 34974803
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  34974869 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 47565682 - 47565748
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  47565682 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 47565748  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 53683048 - 53682982
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  53683048 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 32170539 - 32170503
Alignment:
Q  41 acctctcgcacccgaagcgagaatcataccactagac 77  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  32170539 acctctcgcaccccaagctagaatcataccactagac 32170503  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 6801059 - 6801127
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 88  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6801059 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 6801127  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 39990646 - 39990579
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 87  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  39990646 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccca 39990579  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 35926130 - 35926196
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  35926130 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 35926196  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 13327001 - 13327068
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 87  Q
    |||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
T  13327001 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccca 13327068  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 6796563 - 6796497
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6796563 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 6796497  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 7181630 - 7181564
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7181630 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 7181564  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 35920139 - 35920205
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| ||||| || ||||||||||||| |||| |||||||||||||||||||| ||||||    
T  35920139 attccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccc 35920205  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 10754602 - 10754668
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  10754602 attccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 10754668  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 992447 - 992514
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 87  Q
    |||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
T  992447 attcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccca 992514  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 10750285 - 10750351
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||| |||||||||    
T  10750285 attccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccc 10750351  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 18613154 - 18613086
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 88  Q
    |||||||||||  ||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  18613154 attccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgcccat 18613086  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 32678635 - 32678689
Alignment:
Q  32 gaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    |||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccc 32678689  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 10748689 - 10748755
Alignment:
Q  20 attccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 86  Q
    ||||||||||| || ||||  ||||||| ||||| || ||||||||||| |||||||||||||||||    
T  10748689 attccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccc 10748755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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