View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9956_high_4 (Length: 352)

Name: NF9956_high_4
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9956_high_4
NF9956_high_4
[»] chr8 (6 HSPs)
chr8 (156-343)||(1357219-1357406)
chr8 (29-123)||(1352319-1352413)
chr8 (29-123)||(2041244-2041338)
chr8 (29-119)||(1357444-1357534)
chr8 (29-65)||(1364328-1364364)
chr8 (1-30)||(1358105-1358134)
[»] chr5 (1 HSPs)
chr5 (29-123)||(36717352-36717446)
[»] chr3 (1 HSPs)
chr3 (29-113)||(24620546-24620630)
[»] chr6 (1 HSPs)
chr6 (209-294)||(15434983-15435066)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 156 - 343
Target Start/End: Complemental strand, 1357406 - 1357219
Alignment:
Q  156 atctagttagtgtaaagagacacgtgtcacttgatccaataattaaggataaattgctaacagaaatggatataaaaggagaaaggatgaattatgggaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1357406 atctagttagtgtaaagagacacgtgtcacttgatccaataattaaggataaattgctaacagaaatggatataaaaggagaaaggatgaattatgggaa 1357307  T
Q  256 ggcatgaaaataatatggattgaagtctctatttctccctctgaatattcttctctgtttcttatccccttcttttgtacttctctgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1357306 ggcatgaaaataatatggattgaagtctctatttctccctctgaatattcttctctgtttcttatccccttcttttgtacttctctgc 1357219  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 1352413 - 1352319
Alignment:
Q  29 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1352413 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc 1352319  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 2041244 - 2041338
Alignment:
Q  29 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc 123  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2041244 taacatctccaaggtattttacattatcaatacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc 2041338  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 1357534 - 1357444
Alignment:
Q  29 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  1357534 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg 1357444  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 1364364 - 1364328
Alignment:
Q  29 taacatctccaaggtattttacattatcaatagcttt 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  1364364 taacatctccaaggtattttacattatcaatagcttt 1364328  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 1358134 - 1358105
Alignment:
Q  1 accaagctatgataccatgttaacaatata 30  Q
    ||||||||||||||||||||||||||||||    
T  1358134 accaagctatgataccatgttaacaatata 1358105  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 36717446 - 36717352
Alignment:
Q  29 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  36717446 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattc 36717352  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 24620546 - 24620630
Alignment:
Q  29 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  24620546 taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat 24620630  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 15435066 - 15434983
Alignment:
Q  209 ttgctaacagaaatggatataaaaggagaaaggatgaattatgggaag-gcatgaaaataatatggattgaagtctctatttctccc 294  Q
    ||||||| ||||||||||||||| ||||||||  ||||| ||| || | |||||||||||||  |||||||||||||||||||||||    
T  15435066 ttgctaagagaaatggatataaa-ggagaaagtctgaatgatgtgaggagcatgaaaataat--ggattgaagtctctatttctccc 15434983  T

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