View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_high_7 (Length: 284)
Name: NF9956_high_7
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_high_7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 51144701 - 51144984
Alignment:
| Q |
1 |
tggttattgcaaaagcatcatcaactggacaagcagcttattctaaatcagcaggtgtagtagagcagacaataggttccattcgaactgtatgtacact |
100 |
Q |
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| T |
51144701 |
tggttattgcaaaagcatcatcaactggacaagcagcttattctaaatcagcaggtgtagtagagcagacaataggttccattcgaactgtatgtacact |
51144800 |
T |
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| Q |
101 |
gccgaaaattaatattgaaacttttattttgttttacagcatatatgtatacatgactcccatgtattgaatgcaggttgcatcgttcaccggggagaaa |
200 |
Q |
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| T |
51144801 |
gccgaaaattaatattgaaacttttattttgttttacagcatatatgtatacatgactcccatgtattgaatgcaggttgcatcgttcaccggggagaaa |
51144900 |
T |
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| Q |
201 |
caagctacggctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggttt |
284 |
Q |
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| T |
51144901 |
caagctacagctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggttt |
51144984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 51155840 - 51156124
Alignment:
| Q |
1 |
tggttattgcaaaagcatcatcaactggacaagcagcttattctaaatcagcaggtgtagtagagcagacaataggttccattcgaactgtatgtacact |
100 |
Q |
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| T |
51155840 |
tggttattgcaaaagcatcatcaactggacaggcagcttattctaaatcagcaagtgtagttgagcagacaataggttccatccgaactgtaagtacatt |
51155939 |
T |
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| Q |
101 |
gccgaaaattaatattgaaac----ttttattttgtt-ttacagcatatatgtatacatgactcccatgtattgaatgcaggttgcatcgttcaccgggg |
195 |
Q |
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| T |
51155940 |
agcaaaaaataacattgaaactttgttttattttgttattacataata----tagaaatgagtcccattttctgaatgtaggttgcatcattcactgggg |
51156035 |
T |
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| Q |
196 |
agaaacaagctacggctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggttt |
284 |
Q |
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| T |
51156036 |
agaaacaagctataactaaatataatcagtccttaatcaaggtttataacacttcagtgcaagaggcactagcatctggtgtggggttt |
51156124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 29938245 - 29937964
Alignment:
| Q |
2 |
ggttattgcaaaagcatcatcaactggacaagcagcttattctaaatcagcaggtgtagtagagcagacaataggttccattcgaactgtatgtacactg |
101 |
Q |
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| T |
29938245 |
ggttattgcaaaagcatcatcaactggacaagcagcttattctgaatcagcaagtctagtagagcagacaattggttccatccgaactgtatgcatactg |
29938146 |
T |
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| Q |
102 |
ccgaaaattaatattgaaacttttatttt-gttttacagcatatatgtatacatgactcccatgtattgaatgcaggttgcatcgttcaccggggagaaa |
200 |
Q |
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| T |
29938145 |
gcgaaaaataatatcaacatttttattttaatttgttaccattta--aataaataactttgatttttcaaatacaggttgcatcattcactggggagaaa |
29938048 |
T |
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| Q |
201 |
caagctacggctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggttt |
284 |
Q |
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| T |
29938047 |
caagctacaacaaaatataatcattccttaatcaaggtttacaatactacagtgcaagaggcactagcatctggtgtggggttt |
29937964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 51198644 - 51198737
Alignment:
| Q |
1 |
tggttattgcaaaagcatcatcaactggacaagcagcttattctaaatcagcaggtgtagtagagcagacaataggttccattcgaactgtatg |
94 |
Q |
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| T |
51198644 |
tggttatttcaaaagcatcatccagtggacaagcagcttattctaaagctgcaactgttgtagaacagacaataggctctattagaactgtatg |
51198737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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