View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_low_1 (Length: 554)
Name: NF9956_low_1
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 126 - 551
Target Start/End: Complemental strand, 32249070 - 32248647
Alignment:
| Q |
126 |
cttgtggccactgacatttatgctcttgactaatgggagtctaaaatccctttgtagcatcttgtagggaaacgacaaaatacatgcgtgaagatcaata |
225 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
32249070 |
cttgtggccactgacattgatgctcttgactaatgagagtctgaaatccctttgtagcatcttgtaggggaacgacaaaatacatgcatgaagatcaata |
32248971 |
T |
|
| Q |
226 |
gtaatagcatcttgtccacataaattttgtttgttgattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaattt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248970 |
gtaatagcatcttgtccacataaattttgtttgttgattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaattt |
32248871 |
T |
|
| Q |
326 |
agagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactactataatttgcaacaaactaacaaatttat |
425 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32248870 |
agagtgcatggacattagaagaaaaacttgatatcttaatcctaatta-attaacacccaaaattcactactataatttgcaacaaactaacaaatttat |
32248772 |
T |
|
| Q |
426 |
tgatagataaagaaatacaataaacatcttggggggactagaccaaaacccaagaagtaggataaatcctcacgaaggaaaagagtgcaattcaataaca |
525 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32248771 |
tgatagataattaaatacaataaacatctt-gggagactagaccaaaacccaagaagtaggataaatcctcacgaaggaatagagtgcaattcaataaca |
32248673 |
T |
|
| Q |
526 |
aaactagcaacaacaacaccaaactc |
551 |
Q |
| |
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| T |
32248672 |
aaactagcaacaacaagaccaaactc |
32248647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 524
Target Start/End: Complemental strand, 32255436 - 32254943
Alignment:
| Q |
22 |
ctggtgacatttgataagccagaacaatccaaccgtagcaccgcaacatccacgac-ggaacaccatataacccagccaattccagtatnnnnnnnnngg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
32255436 |
ctggtgacatttgataagccagaacaatccaaccgtagcaccgcaacatccacgacgggaacaccatataacccagccaattccaatat---aaaaaagg |
32255340 |
T |
|
| Q |
121 |
ccatacttgtggccactgacatttatgctcttgactaatgggagtctaaaatccctttgtagcatcttgtagggaaacgacaaaatacatgcgtgaagat |
220 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||| || || ||||||||||| |
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| T |
32255339 |
ccatacttgtggccactgacattgatgctcttgactaatgggagtctaaagtcccactctagcatcttgtagggaaacgacgaagtaggtgcgtgaagat |
32255240 |
T |
|
| Q |
221 |
caatagtaatagcat-------cttgtccacataaattttgtttgttgattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaac |
313 |
Q |
| |
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| || |||| || || | ||||||||||||||||| || |||||||| |||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
32255239 |
ccatggtaacaggatacttagccatgtccacataaattttgcttattgattct-----aagtctattgcattcctc--ctccatgggaatcatgttcaac |
32255147 |
T |
|
| Q |
314 |
tttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcacta-ctataatttgcaacaaa |
412 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||| |||||||||| || |||||| |||||||||| |||| |||||||||| |
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|
| T |
32255146 |
tttgcaaatattagagtgcatggacatcagaagaaaaagttga------catcctaattaagttgacacccaaaattcactacctatcatttgcaacacc |
32255053 |
T |
|
| Q |
413 |
ctaacaaatttattgatagataaagaaatacaataaacatcttggggggactagaccaaaacccaagaagtaggataaatcctcacgaaggaaaagagtg |
512 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||| |||| ||||||||| |
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|
| T |
32255052 |
ctaacaaatttattg--acataaagaaatacaataaaaatcttggaagggatagaccaaaacccaagaagtaggataaccgctcatgaagaaaaagagtg |
32254955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 339 - 474
Target Start/End: Complemental strand, 32236620 - 32236485
Alignment:
| Q |
339 |
attagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactactataatttgcaacaaactaacaaatttattgatagataaaga |
438 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32236620 |
attagaagaaaaacttgatatcataatcctaattagattaacacccaaaattcactactataatttgcaacaaactaacaaatttattgatagagaaaga |
32236521 |
T |
|
| Q |
439 |
aatacaataaacatcttggggggactagaccaaaac |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
32236520 |
tatacaataaacatcttggggggactagaccaaaac |
32236485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 32264347 - 32264241
Alignment:
| Q |
126 |
cttgtggccactgacatttatgctcttgactaatgggagtctaaaatccctttgtagcatcttgtagggaaacgacaaaatacatgcgtgaagatcaata |
225 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |
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|
| T |
32264347 |
cttgtggccattgacattgatgctcttgactaatgggcgtccaaaatccctttgtagcatcttgtagggaaacgacgaagtacgtgcgtgaagatcaata |
32264248 |
T |
|
| Q |
226 |
gtaatag |
232 |
Q |
| |
|
||||||| |
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|
| T |
32264247 |
gtaatag |
32264241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 32264493 - 32264462
Alignment:
| Q |
28 |
acatttgataagccagaacaatccaaccgtag |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
32264493 |
acatttgataagccagaacaatccaaccgtag |
32264462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 32249601 - 32249563
Alignment:
| Q |
33 |
tgataagccagaacaatccaaccgtagcaccgcaacatc |
71 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
32249601 |
tgataagccagaacaatccaatcatagcaccgcaacatc |
32249563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 445
Target Start/End: Complemental strand, 23203128 - 23202952
Alignment:
| Q |
262 |
attctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcc |
361 |
Q |
| |
|
||||||||| |||| |||||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||| ||||||| || | ||||| |
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|
| T |
23203128 |
attctatgataagtatattgcattcatcctcc--atggaagtcatgttcaactttgcaaaaattagagtgcatgggcattagatgatgagcttga----- |
23203036 |
T |
|
| Q |
362 |
taatcctaattagattaacaccccaaattcacta-ctataatttgcaacaaactaacaaatttattgatagataaagaaatacaa |
445 |
Q |
| |
|
||||||| ||| || | | || ||||||| || |||| |||||||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
23203035 |
-catcctaactaggttgagatcctaaattcattacctatcatttgcaacatcctaacaaatttattgataaataaagaaatacaa |
23202952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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