View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_low_10 (Length: 248)
Name: NF9956_low_10
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7094750 - 7094971
Alignment:
| Q |
1 |
aaaaaattatattgttaatatatgttagaaatagggataaatcttcaaattattatttatcaattcacctcttaacactccttcatcttggtgctgataa |
100 |
Q |
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| T |
7094750 |
aaaaaattatattgttagtatatgttagaaatagggataaatcttcaaattatt---tatcaattcacctcttaacactccttcatcttggtgctgataa |
7094846 |
T |
|
| Q |
101 |
cttgttagaaagacatgatatgctatacctaattacatcattaaacacatttaatttacttaattgagtatagagactcaacatttagtgttggacaacc |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7094847 |
cttgttagaaagacatgatat-----acctaattacatcattaaacacatttaatttacttaattgagtatagagactcaacatttagtgttggacaact |
7094941 |
T |
|
| Q |
201 |
atttaagaaaaaagctgtaggactaggaat |
230 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
7094942 |
atttaagaaaaaagcggtaggactaggaat |
7094971 |
T |
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