View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_low_12 (Length: 242)
Name: NF9956_low_12
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 44625564 - 44625334
Alignment:
| Q |
6 |
agatggacatcatcccagctttttgcgtcccattcatcctcaacatcatcatcttcatccactacttcttcaacaacttcaggaagttcaactttgtcct |
105 |
Q |
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| T |
44625564 |
agattgacatcatcccagctttttgcgtcccattcatcctcaacatcatcatcttcatccactacttcttcaacaacttcaggaagttcaactttgtcct |
44625465 |
T |
|
| Q |
106 |
ccatctgcaccgactccacttcttcaaccttttccagttcctctgtatctaaatcagcagtagtttccgctgcttcaacattttcctctgtcttgacagc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44625464 |
ccatctgcaccgactccacttcttcaaccttttccagttcctctgtatctagatcagcagtagtttccgttgcttcaacattttcctctgtcttgacagc |
44625365 |
T |
|
| Q |
206 |
agcggcaccgttatgatttcggttcgttgat |
236 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
44625364 |
agcggcaccgttatgatttcgattcgttgat |
44625334 |
T |
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