View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9956_low_13 (Length: 223)
Name: NF9956_low_13
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 45862325 - 45862134
Alignment:
| Q |
16 |
tatggaggttgagcgtgtagtaaaagctgtgaagccagataatgtggttgttgagctatgcagaagcaggcaagtactagtattttcttttcagaacatg |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45862325 |
tatggatgttgagcgtgtagtaaaagctgtgaagccagataatgtggttgttgagctatgcagaagcaggcaagtactagtattttcttttcagaacatg |
45862226 |
T |
|
| Q |
116 |
aattttaatctaaattattataccagttaaaataatcctataactataaaatgttaatgtataagtctaaagttgatatcaaatgcattctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
45862225 |
aattttaatctaaattattataccagttaaaataatcctataactgtaaaatgttaatgtacatgtctaaagttgatatcaaatgcattctt |
45862134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University