View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9956_low_14 (Length: 213)
Name: NF9956_low_14
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37950723 - 37950930
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
37950723 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtctcaagctttgtgcaatttcgcaagctcaattcttcaagcccggccaa |
37950822 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
200 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37950823 |
atggtggaaggatgaaggtattttttttattgttgttttatctaagatgagcacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
37950922 |
T |
|
| Q |
201 |
gattcaca |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
37950923 |
gattcaca |
37950930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 37950936 - 37951148
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
37950936 |
taaggtctaacttgatgagtttgcttaggtttccaatggaagatggaatggtcttaagctttgtgcaatttcgcaaactcaattcttcaagcccaaccaa |
37951035 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37951036 |
atggtgaaaggatgaagttagttcttttattgttgtttcgtctaagatgaggacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
37951135 |
T |
|
| Q |
201 |
gattcacattcac |
213 |
Q |
| |
|
|||||||| |||| |
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|
| T |
37951136 |
gattcacagtcac |
37951148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 37950514 - 37950722
Alignment:
| Q |
5 |
gtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaaatgg |
104 |
Q |
| |
|
|||||||||| ||||| || |||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||| | |
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| T |
37950514 |
gtctaacttgctgagtgagcagagatttccaatgcaagatggaatagtcttaagctttgagcaacttcgcaagctcaattcttcaagcccgatgaaatag |
37950613 |
T |
|
| Q |
105 |
tgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagtgatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37950614 |
tgaaaggatgaaggtagttcttttattgctattttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagtgatt |
37950713 |
T |
|
| Q |
205 |
cacattcac |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
37950714 |
cacattcac |
37950722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37951149 - 37951356
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| | |||| |
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|
| T |
37951149 |
taaggtctaacttgacgaggttgctaagatttccaatggaagatggaataatcttaagctttgtgcaacttcgcaagttcaattcttcaagcccggccaa |
37951248 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37951249 |
atggtggaaggatgaaggaagttcttttattgctgttttgtctaagatgagcacttcaagattttccatagtcaccttgagttcaggaaaagtttcaagt |
37951348 |
T |
|
| Q |
201 |
gattcaca |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
37951349 |
gattcaca |
37951356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37951575 - 37951782
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || | |||||| |
|
|
| T |
37951575 |
taaggtctaacttgatgagtttgctgagatttccaatggaagatggaatagtcttaagctttgtgcaacttcgtaagcttaattcttcgagtccgaccaa |
37951674 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
200 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
37951675 |
atggtgcaaggatgaaggcaattcttttattgctgttttgtctaggattagcacttctagattttccatagtcatcgcgagttcaggaaaagtttcaagt |
37951774 |
T |
|
| Q |
201 |
gattcaca |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
37951775 |
gattcaca |
37951782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37951362 - 37951569
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
37951362 |
taaggtctaacttgatgagtttgctgagatttccaattgaagacggaatattcttaagctttgtgcaacttcgcaagctcaattcttcaaggccgaccaa |
37951461 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcaggaaaagtttcaagt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||| ||||| ||||| |||||||||||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
37951462 |
atggtgcaaggatgaaggtagttcttttatggttgtttcttctaagatgagcacttctagattttccataattacctcaagttcaggaaaagtttcaagt |
37951561 |
T |
|
| Q |
201 |
gattcaca |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
37951562 |
gattcaca |
37951569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37932064 - 37931878
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||| ||| ||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
37932064 |
taaggtctaacttgaagagtttgctgagacttccaatggaagatggaatcgtctcaagtcttgtgcacatttgcaagctcaactcttcaagcctgaccaa |
37931965 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctgttttgtctaatatgagtacttctagattttccatagtcacctcgagttcagg |
187 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||| |||||| |
|
|
| T |
37931964 |
atggtgcaaggatgaaggtaattcttttattgctgttttgtctaagatgagcactgttagattttccatagtctcctcgatttcagg |
37931878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 37951788 - 37951956
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||| | ||| |
|
|
| T |
37951788 |
taaggtctaacttgatgagtttgctgaggtttccaatggaagatggaatggtcttaagctttgtgcaacttcgcaagctcagttctt-aagcccggtcaa |
37951886 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggt---agttcttttattgctgttttgtctaatatgagtacttctagattttcc |
167 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| |||||| || || ||| |||||||||| |
|
|
| T |
37951887 |
atggtgcaaggatgaaggtaggagttcttttattgctgtttcgtctaagataagcactgatagattttcc |
37951956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 44642050 - 44642173
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| | || | | |||||||||||||||||| | ||||| |
|
|
| T |
44642050 |
taaggtctaacttgctgagtttgctaagacttccaatggaagatggaatagtctcgagctctcgacagtaacacaagctcaattcttcaagtccaaccaa |
44642149 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttc |
124 |
Q |
| |
|
||| || || |||||||||||||| |
|
|
| T |
44642150 |
atgctgcaatgatgaaggtagttc |
44642173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 19875107 - 19875241
Alignment:
| Q |
1 |
taaggtctaacttgatgagtttgctaagatttccaatggaagatggaatagtcttaagctttgtgcaatttcgcaagctcaattcttcaagcctgaccaa |
100 |
Q |
| |
|
||||| |||||||| | ||||||| |||| ||||||||||||| |||||| ||| ||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
19875107 |
taagggctaacttgctaagtttgccaagacttccaatggaagacggaataatctcgagcttacgacaccagcgcaagctcaattcttcaagcccaaccaa |
19875206 |
T |
|
| Q |
101 |
atggtgaaaggatgaaggtagttcttttattgctg |
135 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
19875207 |
atggtgcaaggatgaaggtagttatttgattgctg |
19875241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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