View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_low_4 (Length: 467)
Name: NF9956_low_4
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 34 - 457
Target Start/End: Original strand, 27990743 - 27991156
Alignment:
| Q |
34 |
aggagaagcaaagggtgtgttgctagctattacttggtttgtcttggtgtggaaaaaactcgagatcgcgtattctccttattctaatcaaacatccaat |
133 |
Q |
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| T |
27990743 |
aggagaagcaaagggtgtgttgctagctattacttggtttctcttggtgtggaaaaaactcgagatcgcgtattctccttattctaatcaaacatccaat |
27990842 |
T |
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| Q |
134 |
aatgagtatacatccttcatgtaagagcttatctcaactatcttttgaacttctatttacataaaagataagnnnnnnnnnnnagttaggatattttaaa |
233 |
Q |
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| T |
27990843 |
aatgagtatagatccttcatgtaagagcttatctcaactatcttttgaacttctatttacataaaagataag--tttttttttagttaggatattttaaa |
27990940 |
T |
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| Q |
234 |
atacgatgtttaaccctttctttaccgtaacaaaccaactctttttattcatgattcatgataagctcaggaatacatgatagactacaacnnnnnnnnt |
333 |
Q |
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| T |
27990941 |
atacgatgtttaaccctttctttaccgaaacaaaccaactcttttt-------attcatgataagctaaggaatacatgatagactacaa-taaaaaaat |
27991032 |
T |
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| Q |
334 |
atggtgatcagaacaagagaacattaaagataacattattgaccttgcgacaaaccagtattgaccaattaaaaatgtaagatgtaaaccaaaacatatt |
433 |
Q |
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| T |
27991033 |
atggtgatcagaacaagagaacattaaagataacattattgaccttgcgacaaaccagtattgaccaattaaaaatgtaagatgtgaaccaaaacatatt |
27991132 |
T |
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| Q |
434 |
agcaaccttaaaacagtacctatg |
457 |
Q |
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| T |
27991133 |
agcaaccttaaaacagtacctatg |
27991156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 34 - 457
Target Start/End: Original strand, 28048045 - 28048458
Alignment:
| Q |
34 |
aggagaagcaaagggtgtgttgctagctattacttggtttgtcttggtgtggaaaaaactcgagatcgcgtattctccttattctaatcaaacatccaat |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28048045 |
aggagaagcaaagggtgtgttgctagctattacttggtttctcttggtgtggaaaaaactcgagatcgcgtattctccttattctaatcaaacatccaat |
28048144 |
T |
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| Q |
134 |
aatgagtatacatccttcatgtaagagcttatctcaactatcttttgaacttctatttacataaaagataagnnnnnnnnnnnagttaggatattttaaa |
233 |
Q |
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| T |
28048145 |
aatgagtatagatccttcatgtaagagcttatctcaactatcttttgaacttctatttacataaaagataag--tttttttttagttaggatattttaaa |
28048242 |
T |
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| Q |
234 |
atacgatgtttaaccctttctttaccgtaacaaaccaactctttttattcatgattcatgataagctcaggaatacatgatagactacaacnnnnnnnnt |
333 |
Q |
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| T |
28048243 |
atacgatgtttaaccctttctttaccgaaacaaaccaactcttttt-------attcatgataagctaaggaatacatgatagactacaa-taaaaaaat |
28048334 |
T |
|
| Q |
334 |
atggtgatcagaacaagagaacattaaagataacattattgaccttgcgacaaaccagtattgaccaattaaaaatgtaagatgtaaaccaaaacatatt |
433 |
Q |
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| T |
28048335 |
atggtgatcagaacaagagaacattaaagataacattattgaccttgcgacaaaccagtattgaccaattaaaaatgtaagatgtgaaccaaaacatatt |
28048434 |
T |
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| Q |
434 |
agcaaccttaaaacagtacctatg |
457 |
Q |
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| T |
28048435 |
agcaaccttaaaacagtacctatg |
28048458 |
T |
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