View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_low_6 (Length: 338)
Name: NF9956_low_6
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 34895614 - 34895286
Alignment:
| Q |
1 |
ctgccctgtcgtgtcatcaattttacagtatgttgcatcgccaaaataggtttttattttccattttat------tgaggtacaatttgttatcattgaa |
94 |
Q |
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| T |
34895614 |
ctgccctgtcgtgtcatcaattttacagtatgttgcatcgtcaaaataggtttttattttccattttatctactatgaggtacaatttgttatcattgaa |
34895515 |
T |
|
| Q |
95 |
accatttaacaggtatgatgcttgcatggacgtgactgaaagcgatcacaaaccagttcgatgtaagttcaacgtgagaatttctcatgctgatagatca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34895514 |
accatttaacaggtatgatgcttgcatggacgtgactgaaagcgatcacaaaccagttcgatgtaagttcaacgtgagaatttctcatgctgatagatca |
34895415 |
T |
|
| Q |
195 |
attaggagaaaagaatttggtgagattatgacatcaaatgagaaaatcagatctatgcttgaagaatcgcgttatgttccagaatgcaacgtcagcccag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34895414 |
attaggagaaaagaatttggtgagattatgacatcaaatgagaaaatcagatctatgcttgaagaatcgcgttatgttccagaatgcaatgtcagcccag |
34895315 |
T |
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| Q |
295 |
aaaatttagtccttgaaaaccaagaggct |
323 |
Q |
| |
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| ||||||||||||||||||||||||||| |
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| T |
34895314 |
acaatttagtccttgaaaaccaagaggct |
34895286 |
T |
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