View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9956_low_9 (Length: 249)
Name: NF9956_low_9
Description: NF9956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9956_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 51145006 - 51145199
Alignment:
| Q |
23 |
atctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgctgtattga |
122 |
Q |
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| T |
51145006 |
atctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgctgtattga |
51145105 |
T |
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| Q |
123 |
ttggttcaacgtaagatttgttttctttttctccctttctatgagcctaatatttctacaatttattcctttccactcataagatatgaagatg |
216 |
Q |
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| T |
51145106 |
ttggttcaacgtaagatttgttttctttttctccctttctatgagcctaatatttctacaatttattcctttccactcataagatatgaagatg |
51145199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 51156146 - 51156333
Alignment:
| Q |
23 |
atctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgctgtattga |
122 |
Q |
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| T |
51156146 |
atctccagttatggtttggctgtttggtatggtgggaaattgataatagagaaaggatatacaggtggggatgttatgactgtaatttttgctgtattga |
51156245 |
T |
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| Q |
123 |
ttggttcaacgtaagatttgt-tttctttttctccctttctatgagcctaatatttctacaatttattcctttccactcataagatat |
209 |
Q |
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| T |
51156246 |
ctggttcaatgtaagatttgtgttgttttttcttctttactatgagccaataatttctaaaatttatttctttccactcgtaagatat |
51156333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 29937942 - 29937827
Alignment:
| Q |
23 |
atctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgctgtattga |
122 |
Q |
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|||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| || |||||||||||| | ||||| |||||| |
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| T |
29937942 |
atctccagttacagtttggctgtatggtttggtgggaaattgataatagagaaaggatatacaggaggcgatgttatgactgtactatttgcaatattga |
29937843 |
T |
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| Q |
123 |
ttggttcaacgtaaga |
138 |
Q |
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|||||||| |||||| |
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| T |
29937842 |
ctggttcaatgtaaga |
29937827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 51198951 - 51199044
Alignment:
| Q |
29 |
agttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgctgtattga |
122 |
Q |
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||||||||||| || |||||||||||||| |||||| |||| ||||||||||| || |||||||| ||| ||||| |||||||||||||||||| |
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| T |
51198951 |
agttatggtttagcagtatggtttggtggaaaaatggtaatagagaaaggatataccggaggggaagttgtgactataatttttgctgtattga |
51199044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 51212185 - 51212250
Alignment:
| Q |
25 |
ctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggagg |
90 |
Q |
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| T |
51212185 |
ctgcagttatgctttggctgtatggtttggagggaagatggtacttgagaaaggttatacaggagg |
51212250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 36285374 - 36285456
Alignment:
| Q |
32 |
tatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgc |
114 |
Q |
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| T |
36285374 |
tatggtttggctatatggtttggtggcaaattggtagtagagaaagggtacacaggagggaacattatgaccgtaatatttgc |
36285456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 49738002 - 49737917
Alignment:
| Q |
29 |
agttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgc |
114 |
Q |
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||||||| |||||||||||||||||| ||||| |||||| | | |||||| || ||||||||||| || || | |||| ||||||| |
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| T |
49738002 |
agttatgctttggctgtatggtttggagggaagatgatattagcgaaaggttatacaggaggggaagtcataagtgtattttttgc |
49737917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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