View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9957_low_1 (Length: 363)
Name: NF9957_low_1
Description: NF9957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9957_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 11381021 - 11381358
Alignment:
| Q |
10 |
agagacacaaacactcttaatgaggaaaagaatgtgtaccagcacaccaggaggtgatgaatgacaaagattctcctctttaatactagacaggtaactc |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11381021 |
agagacacaaatactcttaatgaggaaaagaatgtgtaccagcacaccaggaggtgatgaatgacaaagattctcctctttaatactagacaggtaactc |
11381120 |
T |
|
| Q |
110 |
attttcaagtccaacaaactctcattgccatcactagtcaaatttggggtcaatgctgtttcaaacgatgaaaatcgttctgaagaagaaacagatgatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11381121 |
attttcaagtccaacaaactctcattgccatcactagtcaaatttggggtcaataccgtttcaaacgatgaaaatcgttctgaagaagaaacagatgatg |
11381220 |
T |
|
| Q |
210 |
ccatgctccttccactttcggatgcagagctgatagatcttactctatgattatgtaactcttgatcatgtgaaatttatctagatatcaagtgaggtga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11381221 |
ccatgctccttccactttcggatgcagagctgatagatcttactctatgatgatgtaactcttgatcatgtgaaattgatctagatatcaagtgaggtga |
11381320 |
T |
|
| Q |
310 |
gtgaccaacttcagagttttgcatttgctgcaccaaag |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11381321 |
gtgaccaacttcagagttttgcatttgctgcaccaaag |
11381358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University