View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9957_low_2 (Length: 303)
Name: NF9957_low_2
Description: NF9957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9957_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 46782368 - 46782586
Alignment:
| Q |
1 |
aagcctaaggtctagggaacaaagtcccagtaacatcattcctcaaggaaggtcgtagatcatcaggaggagaggagtgaagtagtaaggccgcatctga |
100 |
Q |
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| T |
46782368 |
aagcctaaggtctagggaacaaagtctcagtagcatcattcctcaaagaaggtcgtagatcatcaggaggagaggagtgaagtagtaaggccgcgtctga |
46782467 |
T |
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| Q |
101 |
acttgcatcaagcttggcaaaataatctgcgcaatgattctcttcgcaaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatct |
200 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46782468 |
acttgcaccaagcttggcaaaataatctgcacaatgattcccttcgcgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatcc |
46782567 |
T |
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| Q |
201 |
tggatgagaacaacatgaa |
219 |
Q |
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|||||||||||| |||||| |
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| T |
46782568 |
tggatgagaacagcatgaa |
46782586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 53242411 - 53242193
Alignment:
| Q |
1 |
aagcctaaggtctagggaacaaagtcccagtaacatcattcctcaaggaaggtcgtagatcatcaggaggagaggagtgaagtagtaaggccgcatctga |
100 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||||| ||||||| ||||| || |
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| T |
53242411 |
aagcctaatgtctagggaacaaagtctcagtagcatcattcctcaaagaaggccgtaggtcatcagggggagaggagtgaagtcgtaaggctgcatcaga |
53242312 |
T |
|
| Q |
101 |
acttgcatcaagcttggcaaaataatctgcgcaatgattctcttcgcaaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatct |
200 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53242311 |
acttgcaccaagcttggcaaaataatatgcgcaatgattccattcgtgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatgtcc |
53242212 |
T |
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| Q |
201 |
tggatgagaacaacatgaa |
219 |
Q |
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|||||||||||| |||||| |
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| T |
53242211 |
tggatgagaacagcatgaa |
53242193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 26017618 - 26017707
Alignment:
| Q |
12 |
ctagggaacaaagtcccagtaacatcattcctcaaggaaggtcgtagatcatcaggaggagaggagtgaagtagtaaggccgcatctgaa |
101 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
26017618 |
ctagggaacaaagtcccaataacatcattcttcaaagaaggtcgtaggtcatcaggaggagaggagtgaagtaataagacggcatctgaa |
26017707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 32350528 - 32350455
Alignment:
| Q |
222 |
attactctctctggtttactaatacatttctctcttatcattttcatcgtgtcttctccttcttctcctatgct |
295 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
32350528 |
attactctctcttgtttattaatacatttctctcttatcgttttcatcgtgtcttctccttcttctcctttgct |
32350455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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