View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9957_low_3 (Length: 302)
Name: NF9957_low_3
Description: NF9957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9957_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 52955940 - 52955743
Alignment:
| Q |
18 |
attataacagccgactgcaaagcacgacataaatggccagaaacaggactacaaatggagcctagtgcattcacaaaggcggtctacggagccataaata |
117 |
Q |
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| T |
52955940 |
attataacagccgactgcaaagcacgacataaatggccagaaacaggactacaaatgcagcctagtgcattcacaaaggtggtcgacagagccataaata |
52955841 |
T |
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| Q |
118 |
aaaaacagcaccattcaatcgcaacagctcctaaaaattggaaaagctggacacaaaagcagtaaaattgaacaccttagcagtacccaaaactgcac |
215 |
Q |
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| T |
52955840 |
aaaaacagcaccattcaatcgcaacagctcctaaaaactggaaaagctggacacaaaatcagtaaaattgaacaccttagcagtacccaaaacagcac |
52955743 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 42714705 - 42714761
Alignment:
| Q |
242 |
tcataacagaccaacacagcagtacagaaggtcaaaaaataggcccaacaccaaact |
298 |
Q |
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|||||||||| |||||||||| |||| |||||||||||||| |||| ||||||||| |
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| T |
42714705 |
tcataacagatcaacacagcaacacaggaggtcaaaaaatagtcccaccaccaaact |
42714761 |
T |
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