View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9958_high_1 (Length: 442)
Name: NF9958_high_1
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9958_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 44 - 426
Target Start/End: Complemental strand, 33695641 - 33695257
Alignment:
| Q |
44 |
tcattcttgtattgctttttgactaagaataaattagagagggtgactgaccagt--cnnnnnnngattcgtcgtttctagacttttaaataaaccaata |
141 |
Q |
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| T |
33695641 |
tcattcttgtattgatttttgactaagaataaattagagagggtgactgactagtgtcaaaaaaagattcgtcgtttctagacttttaaataaatcaata |
33695542 |
T |
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| Q |
142 |
tccaatgagaaaaatagcactatgttgtccgattgcatgcattaattgtgaatcataaatgacgtttaccttcattaggatcattatgtaaatcaaattt |
241 |
Q |
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| T |
33695541 |
tccaatgagaaaaatagcactatgttgtccgattgcatgcattaattgtgaatcataaatgacgttcaccttcattaggatcattatgtaaatcaaattt |
33695442 |
T |
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| Q |
242 |
gagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaaatttctgacgaagtactacatctttaacaagaagcaatttaaagaca |
341 |
Q |
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| T |
33695441 |
gagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaaatttctgacgaagtactacatctttaacaagtagcaatttaaagaca |
33695342 |
T |
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| Q |
342 |
tatgataagtacatcaaacctaattagtaggcaacttctcttacataacaatccacgtaaaatgacgaaattgagaggttttatt |
426 |
Q |
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| T |
33695341 |
tatgataagtacatcaaacctaattagtaggcaacttctcttacataacaatccacgtaaaatgatgaaattgagaggttttatt |
33695257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 35297401 - 35297316
Alignment:
| Q |
209 |
accttcattaggatcattatgtaaatcaaatttgagtttatgccaaaccggtatcgtcttagggcaatcccacaacatacgtaaaa |
294 |
Q |
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| T |
35297401 |
accttcatttgaatcattatgaaaattaaatatgagtttatgccaaacccgcatggccttagggcaatcacgcaacatatgtaaaa |
35297316 |
T |
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