View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9958_low_11 (Length: 210)

Name: NF9958_low_11
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9958_low_11
NF9958_low_11
[»] chr8 (5 HSPs)
chr8 (86-194)||(9883807-9883915)
chr8 (78-167)||(42147595-42147684)
chr8 (89-167)||(40391561-40391639)
chr8 (83-168)||(17290810-17290895)
chr8 (104-167)||(15113416-15113479)
[»] scaffold0281 (1 HSPs)
scaffold0281 (84-200)||(1986-2102)
[»] chr4 (8 HSPs)
chr4 (84-205)||(23974305-23974426)
chr4 (83-205)||(19611711-19611833)
chr4 (75-163)||(15706843-15706931)
chr4 (84-167)||(25126064-25126146)
chr4 (84-168)||(18873760-18873845)
chr4 (86-167)||(14645936-14646017)
chr4 (104-167)||(13884119-13884182)
chr4 (93-141)||(11153979-11154027)
[»] chr6 (6 HSPs)
chr6 (83-205)||(12980301-12980423)
chr6 (86-167)||(19893054-19893135)
chr6 (84-163)||(19566719-19566799)
chr6 (88-141)||(19768908-19768961)
chr6 (83-166)||(9548942-9549027)
chr6 (127-167)||(19565070-19565110)
[»] scaffold0323 (1 HSPs)
scaffold0323 (84-192)||(16429-16537)
[»] chr2 (3 HSPs)
chr2 (84-167)||(32623429-32623512)
chr2 (84-163)||(16093706-16093785)
chr2 (86-167)||(20263536-20263613)
[»] chr5 (1 HSPs)
chr5 (84-163)||(21143764-21143843)
[»] chr3 (6 HSPs)
chr3 (84-167)||(18705351-18705434)
chr3 (86-169)||(9733450-9733533)
chr3 (83-163)||(18534266-18534346)
chr3 (88-150)||(3593261-3593323)
chr3 (87-167)||(3290816-3290896)
chr3 (88-141)||(39727609-39727662)
[»] chr1 (4 HSPs)
chr1 (84-167)||(12786420-12786503)
chr1 (84-167)||(9131509-9131592)
chr1 (84-167)||(18513647-18513730)
chr1 (84-139)||(12484114-12484169)
[»] scaffold0978 (1 HSPs)
scaffold0978 (83-168)||(2986-3071)
[»] chr7 (5 HSPs)
chr7 (86-167)||(11508538-11508619)
chr7 (84-167)||(32945491-32945574)
chr7 (89-141)||(18147481-18147533)
chr7 (107-164)||(3312842-3312900)
chr7 (86-136)||(34424955-34425005)
[»] scaffold0005 (1 HSPs)
scaffold0005 (86-167)||(171273-171354)
[»] scaffold0019 (1 HSPs)
scaffold0019 (110-168)||(183153-183212)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 9883807 - 9883915
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttcagctaagtttgttacta 185  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  9883807 ttctctatttataagttgtaattgagtttgttaccaatctttttagattactatatttcctctatatttgttattaatctttcagctaagtttgttacta 9883906  T
Q  186 aagattcct 194  Q
    |||||||||    
T  9883907 aagattcct 9883915  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 42147595 - 42147684
Alignment:
Q  78 aacccttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  42147595 aacccttcttctctatttataagttataattgagtttgttaccaatctttttagattactatatgtcctctatgtttgttactaatcttt 42147684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 40391561 - 40391639
Alignment:
Q  89 tctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    |||||||||||| | ||||||||||||| || |||||||||| |||||||||| |||||||| ||||||||| ||||||    
T  40391561 tctatttataagctctaattgagtttgttaccaatctttttatattactatatgtcctctagttttgttacttatcttt 40391639  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 17290810 - 17290895
Alignment:
Q  83 ttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttc 168  Q
    |||||||||||||||||| | ||||||||||| | || ||| ||||||||||||||||| | |||||| |||||| ||||||||||    
T  17290810 ttcttctctatttataagctctaattgagtttattacaaatatttttagattactatatgttctctaggtttgttgctaatctttc 17290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 15113416 - 15113479
Alignment:
Q  104 taattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||| || ||||||||||| ||||||||| | |||||| | ||||||||||||||    
T  15113416 taattgagtttgttaccaatctttttagcttactatatattctctaggtgtgttactaatcttt 15113479  T

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Target: scaffold0281 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 1986 - 2102
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttcagctaagtttgttac 183  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  1986 tcttctctatttataagttataattgagtttgttaccaatctttttagattactatatttcctctaagtttgttactaatatttcagctaagtttgttac 2085  T
Q  184 taaagattcctctctgc 200  Q
    ||||||||||| |||||    
T  2086 taaagattcctatctgc 2102  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 23974305 - 23974426
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttcagctaagtttgttac 183  Q
    ||||||||| ||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  23974305 tcttctctaattataagttgtaattgagtttgttaccgatcgttttagattactatatttcctctaggtttgttactaatctttcaactaagtttgttac 23974404  T
Q  184 taaagattcctctctgctcctc 205  Q
    ||||||||||| ||||| ||||    
T  23974405 taaagattcctatctgcacctc 23974426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 19611833 - 19611711
Alignment:
Q  83 ttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttcagctaagtttgtta 182  Q
    |||||||||||||||||| | ||||||||||||| || ||||||||||||||  ||||| |||||||| |||||||||||||||||||||||||||||||    
T  19611833 ttcttctctatttataagctttaattgagtttgttaccaatctttttagatttatatatgtcctctaggtttgttactaatctttcagctaagtttgtta 19611734  T
Q  183 ctaaagattcctctctgctcctc 205  Q
    |||||||||||| ||||| ||||    
T  19611733 ctaaagattcctatctgcacctc 19611711  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 15706843 - 15706931
Alignment:
Q  75 ggtaacccttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaat 163  Q
    |||||||||||||||||| ||||||| | ||||||||||||| || |||||||| | |||||||||| | |||||| ||||||||||||    
T  15706843 ggtaacccttcttctctaattataagctctaattgagtttgttacaaatcttttcacattactatatgttctctaggtttgttactaat 15706931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 25126146 - 25126064
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    |||||||||| |||||| | ||||||||||||| || |||||||||||||||||| || |||||||| ||||||||||||||||    
T  25126146 tcttctctatctataagctctaattgagtttgttac-aatctttttagattactaaatgtcctctaggtttgttactaatcttt 25126064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 18873760 - 18873845
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatat-ttcctctagatttgttactaatctttc 168  Q
    ||||||||||||||||||| ||||| ||||||| | ||||||||| |||||||||||| | ||||||  |||||||||||||||||    
T  18873760 tcttctctatttataagttctaatttagtttgttattaatcttttcagattactatatgtacctctaagtttgttactaatctttc 18873845  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 14645936 - 14646017
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||  | ||||||||||||| || ||| |||||||||| |||||| | |||||| ||||||||||||||||    
T  14645936 ttctctatttataatctctaattgagtttgttaccaatttttttagatttctatatgttctctaggtttgttactaatcttt 14646017  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 13884182 - 13884119
Alignment:
Q  104 taattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||| || || |||||||||||||||||| |||||||| ||| |||  |||||||    
T  13884182 taattgagtttgttaccaaactttttagattactatatgtcctctaggtttattaacaatcttt 13884119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 11153979 - 11154027
Alignment:
Q  93 tttataagttgtaattgagtttgtaactaatctttttagattactatat 141  Q
    |||||||| | ||||||||||||| || ||||||||||||||| |||||    
T  11153979 tttataagctctaattgagtttgttaccaatctttttagattagtatat 11154027  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 12980423 - 12980301
Alignment:
Q  83 ttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttcagctaagtttgtta 182  Q
    |||||||||||||||||| | ||||||||||||| |  |||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||    
T  12980423 ttcttctctatttataagctctaattgagtttgttatcaatctttttagatttctatatgtcgtctaggtttgttactaatctttcagctaagtttgtta 12980324  T
Q  183 ctaaagattcctctctgctcctc 205  Q
    |||| ||||||| ||||| ||||    
T  12980323 ctaacgattcctatctgcacctc 12980301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 19893054 - 19893135
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||| | ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19893054 ttctctatttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctagatttgttactaatcttt 19893135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 19566799 - 19566719
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctct-agatttgttactaat 163  Q
    ||||||||||||||||  | ||||||||||||| || ||||||||||||||||||||| |||||| || ||||||||||||    
T  19566799 tcttctctatttataatctctaattgagtttgttaccaatctttttagattactatatgtcctctaagttttgttactaat 19566719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 19768961 - 19768908
Alignment:
Q  88 ctctatttataagttgtaattgagtttgtaactaatctttttagattactatat 141  Q
    ||||||||||||| | ||||||||||||| || |||||||||||||||||||||    
T  19768961 ctctatttataagctctaattgagtttgttaccaatctttttagattactatat 19768908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 9548942 - 9549027
Alignment:
Q  83 ttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatat-ttcctctaga-tttgttactaatctt 166  Q
    |||||||||||||||||| | ||||||||||||| || ||| | ||||||||||||| | | |||||||| |||||||||| ||||    
T  9548942 ttcttctctatttataagctctaattgagtttgttaccaatttctttagattactatttgtacctctagattttgttactattctt 9549027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 19565110 - 19565070
Alignment:
Q  127 tttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  19565110 tttagattactatatgtcctctaggtttgttactaatcttt 19565070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 16429 - 16537
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttcagctaagtttgttac 183  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||| || |||||||||| ||||||| |||||||||||||    
T  16429 tcttctctatttataagttgtaattgagtttgttaccaatctttttagattagtatgtttcctccaggtttgttactattctttcaactaagtttgttac 16528  T
Q  184 taaagattc 192  Q
    ||| |||||    
T  16529 taaggattc 16537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 32623512 - 32623429
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  32623512 tcttctctatttataaggtctaattaagtttgtcactaatctttttagattactatatgtcatctaggtttgttactaatcttt 32623429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 16093706 - 16093785
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaat 163  Q
    ||||||||||||||||  | ||||||||||||| ||  ||||||||| |||||||||| |||||||  ||| ||||||||    
T  16093706 tcttctctatttataaactctaattgagtttgttacctatctttttaaattactatatgtcctctaagttttttactaat 16093785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 20263613 - 20263536
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    |||||||||||| || | ||||||||||||| || ||||||| ||||||||    | |||| ||| ||||||||||||||||    
T  20263613 ttctctatttattagctctaattgagtttgttaccaatctttatagattac----tgtcctttaggtttgttactaatcttt 20263536  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 21143843 - 21143764
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaat 163  Q
    ||||||||||||||||| | ||||||||||||| || |||||||| |||||||||||| |||||||| ||||||||||||    
T  21143843 tcttctctatttataagctctaattgagtttgttaccaatcttttcagattactatatgtcctctaggtttgttactaat 21143764  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 18705434 - 18705351
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||||  | ||||||||||||| || ||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  18705434 tcttctctatttataaactctaattgagtttgttaccaatatttttagattactatatgtcctctagctttgttactaatcttt 18705351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 9733533 - 9733450
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttca 169  Q
    ||||||||||||||  | ||||||||| ||| || ||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  9733533 ttctctatttataaactctaattgagtatgttaccaatctttttagattactatatgtcctccaggtttgttactaatctttca 9733450  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 18534346 - 18534266
Alignment:
Q  83 ttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaat 163  Q
    ||||||||||||||||| || ||||| ||||||| |  |||||||||| |||||||||||||||||| ||||||| |||||    
T  18534346 ttcttctctatttataaattctaattaagtttgttagcaatctttttaaattactatatttcctctatatttgttgctaat 18534266  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 3593261 - 3593323
Alignment:
Q  88 ctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctag 150  Q
    ||||||||||||| | ||||||||||||| || ||||||||||||||||||||| ||||||||    
T  3593261 ctctatttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctag 3593323  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 3290816 - 3290896
Alignment:
Q  87 tctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    |||||||||||||| | || |||||||||| || |||||||||| |||||||||| | ||||||  |||||||||||||||    
T  3290816 tctctatttataagctctagttgagtttgttaccaatctttttaaattactatatgttctctaggcttgttactaatcttt 3290896  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 39727662 - 39727609
Alignment:
Q  88 ctctatttataagttgtaattgagtttgtaactaatctttttagattactatat 141  Q
    ||||||||||||| | ||||||||||||| |  ||||||||||||||| |||||    
T  39727662 ctctatttataagctctaattgagtttgttatcaatctttttagattattatat 39727609  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 12786420 - 12786503
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||||| | ||||||||||||| || |||||||||| |||||||||| || ||||| ||||||||||||||||    
T  12786420 tcttctctatttataagctctaattgagtttgttaccaatctttttatattactatatgtcttctaggtttgttactaatcttt 12786503  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 9131592 - 9131509
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||||| | ||||||||||||| || |||| |||||||||||| ||| |||||||  ||||||||||||||||    
T  9131592 tcttctctatttataagctttaattgagtttgttaccaatcgttttagattactctatgtcctctaagtttgttactaatcttt 9131509  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 18513730 - 18513647
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    |||||||||||||||| || |||| |||||||| ||  || ||||||||||||||||| |||||||  ||||||||||||||||    
T  18513730 tcttctctatttataacttctaatcgagtttgttaccgatttttttagattactatatgtcctctaagtttgttactaatcttt 18513647  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 12484169 - 12484114
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactat 139  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  12484169 tcttctctatttataagctctaattgagtttgttactaatcttttcagattactat 12484114  T

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Target: scaffold0978 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 2986 - 3071
Alignment:
Q  83 ttcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatctttc 168  Q
    ||||||| |||||||||| | ||||||||||||| || | |||||| |||||||||||| | ||||||||||||||||||||||||    
T  2986 ttcttctatatttataagctctaattgagtttgttacaactcttttcagattactatatgttctctagatttgttactaatctttc 3071  T

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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 11508619 - 11508538
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||| | ||||||||||||| || ||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  11508619 ttctctatttataagctctaattgagtttgttaccaatttttttagattactatatgtcctccaggtttgttactaatcttt 11508538  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 32945491 - 32945574
Alignment:
Q  84 tcttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||||| | |||| |||||||| |  ||||||||||  ||| ||||| |||||||||||||||||||||||||    
T  32945491 tcttctctatttataagctttaatagagtttgttatcaatctttttatgttaatatatgtcctctagatttgttactaatcttt 32945574  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 18147533 - 18147481
Alignment:
Q  89 tctatttataagttgtaattgagtttgtaactaatctttttagattactatat 141  Q
    |||||||||||| | ||||||||||||| || |||||||||||||||||||||    
T  18147533 tctatttataagctctaattgagtttgttaccaatctttttagattactatat 18147481  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 3312842 - 3312900
Alignment:
Q  107 ttgagtttgtaactaatctttttagattactatattt-cctctagatttgttactaatc 164  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||  |||||||||||||    
T  3312842 ttgagtttgttactaatctttttagattactatgtttacctctatgtttgttactaatc 3312900  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 34424955 - 34425005
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattac 136  Q
    |||||||||| || | | ||||||||||||| |||||||||||||||||||    
T  34424955 ttctctatttgtaggctctaattgagtttgttactaatctttttagattac 34425005  T

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Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 171354 - 171273
Alignment:
Q  86 ttctctatttataagttgtaattgagtttgtaactaatctttttagattactatatttcctctagatttgttactaatcttt 167  Q
    ||||||||||||||  | ||||||||||||| || ||| |||||||||| |||||| | |||||| ||||||||||||||||    
T  171354 ttctctatttataatctctaattgagtttgttaccaatttttttagatttctatatgttctctaggtttgttactaatcttt 171273  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 183153 - 183212
Alignment:
Q  110 agtttgtaactaatctttttagattactatat-ttcctctagatttgttactaatctttc 168  Q
    ||||||| ||||||||||| |||||||||||| | ||||||| |||||||||||||||||    
T  183153 agtttgttactaatcttttcagattactatatgtacctctaggtttgttactaatctttc 183212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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