View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9958_low_2 (Length: 285)

Name: NF9958_low_2
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9958_low_2
NF9958_low_2
[»] chr6 (46 HSPs)
chr6 (4-275)||(29826955-29827226)
chr6 (4-275)||(29842934-29843195)
chr6 (136-235)||(28235574-28235673)
chr6 (136-235)||(28326487-28326586)
chr6 (136-235)||(28504123-28504222)
chr6 (136-235)||(28227961-28228060)
chr6 (136-235)||(28182127-28182226)
chr6 (136-235)||(28243804-28243903)
chr6 (137-267)||(27610195-27610325)
chr6 (137-267)||(27717574-27717704)
chr6 (137-267)||(31285536-31285666)
chr6 (26-98)||(29823218-29823291)
chr6 (168-235)||(28296846-28296913)
chr6 (168-235)||(28515160-28515227)
chr6 (148-221)||(28240377-28240450)
chr6 (151-227)||(28186411-28186487)
chr6 (137-216)||(26862608-26862687)
chr6 (167-221)||(25539566-25539620)
chr6 (136-230)||(28097517-28097611)
chr6 (137-214)||(25492394-25492471)
chr6 (136-205)||(26950782-26950851)
chr6 (136-205)||(26975990-26976059)
chr6 (137-221)||(26647502-26647586)
chr6 (137-221)||(26753470-26753554)
chr6 (141-221)||(26803469-26803549)
chr6 (114-206)||(26938067-26938159)
chr6 (137-221)||(27337170-27337254)
chr6 (137-221)||(27397910-27397994)
chr6 (137-221)||(28782124-28782208)
chr6 (164-267)||(27426714-27426817)
chr6 (136-198)||(25074913-25074975)
chr6 (167-221)||(25484082-25484136)
chr6 (167-221)||(25511915-25511969)
chr6 (167-221)||(26056945-26056999)
chr6 (167-221)||(26076915-26076969)
chr6 (167-221)||(26885093-26885147)
chr6 (137-267)||(28787215-28787345)
chr6 (137-267)||(28793336-28793466)
chr6 (138-200)||(31289313-31289375)
chr6 (137-198)||(26812574-26812635)
chr6 (164-221)||(27592123-27592180)
chr6 (166-267)||(27679927-27680028)
chr6 (164-221)||(27697688-27697745)
chr6 (137-221)||(27530376-27530460)
chr6 (173-221)||(29477176-29477224)
chr6 (176-212)||(29822267-29822303)
[»] scaffold0038 (4 HSPs)
scaffold0038 (136-235)||(35736-35835)
scaffold0038 (136-235)||(28459-28558)
scaffold0038 (136-235)||(43966-44065)
scaffold0038 (148-221)||(40539-40612)
[»] scaffold0019 (1 HSPs)
scaffold0019 (136-235)||(57368-57467)
[»] chr4 (2 HSPs)
chr4 (57-275)||(5089945-5090163)
chr4 (164-267)||(18074738-18074841)
[»] chr5 (1 HSPs)
chr5 (114-235)||(16691876-16691997)
[»] chr2 (2 HSPs)
chr2 (114-205)||(17992267-17992358)
chr2 (136-216)||(3280687-3280767)
[»] scaffold0349 (1 HSPs)
scaffold0349 (137-267)||(2614-2744)
[»] chr8 (1 HSPs)
chr8 (106-208)||(16441092-16441194)
[»] scaffold0277 (2 HSPs)
scaffold0277 (137-221)||(3787-3871)
scaffold0277 (137-267)||(12750-12880)
[»] chr1 (3 HSPs)
chr1 (137-221)||(28126750-28126834)
chr1 (119-205)||(26136927-26137013)
chr1 (137-221)||(28163451-28163535)
[»] scaffold0419 (1 HSPs)
scaffold0419 (137-267)||(8464-8594)
[»] scaffold0003 (1 HSPs)
scaffold0003 (164-267)||(60546-60649)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 46)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 29827226 - 29826955
Alignment:
Q  4 agaagcaaaggctattgcacggtctaaaatgtcatcatatcttgaatcacctatactatctttaaaagctttccacctaaataattcaagggattctatc 103  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827226 agaagcataagctattgcacggtctaaaatgtcatcatatcttgaatcacctatactatctttaaaagctttccacctaaataattcaagggattctatc 29827127  T
Q  104 ctatttagcgcatctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaacc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827126 ctatttagcgcatctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaacc 29827027  T
Q  204 aatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatcaaaagtactttct 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827026 aatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatcaaaagtactttct 29826955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 29842934 - 29843195
Alignment:
Q  4 agaagcaaaggctattgcacggtctaaaatgtcatcatatcttgaatcacctatactatctttaaaagctttccacctaaataattcaagggattctatc 103  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||       |||||||||||||| ||    
T  29842934 agaagcataagctattgcacggtctaaaatgtcatcatagcttgaatcaactatactatttttaaaagctttccac-------attcaagggattctttc 29843026  T
Q  104 ctatttagcgcatctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaacc 203  Q
    ||||||||||||| ||||||||||||| ||| ||||  ||||||||||||||||||||||||||||||   |||||||||| |||| |||||||||||||    
T  29843027 ctatttagcgcatttacttgatattttatataaatcgaatgacttgttagcaaatgttggtctcgagt---aatgatcactctgctaccaggaccaaacc 29843123  T
Q  204 aatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatcaaaagtactttct 275  Q
    | |||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  29843124 agtcaagtccgcccgccataacttgcaattgccttaggttgtcaacatcgtcaagaatcaaaagaactttct 29843195  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28235673 - 28235574
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||||| | || ||||||||||||||||||| | ||||||||| ||| |||||||||    
T  28235673 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgc 28235574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28326586 - 28326487
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    |||||| |||||| |||||||||||| |||||||||||||| ||||||| | ||||||||||| ||||||||||||||||| |||| ||| |||||||||    
T  28326586 aatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaacctgcaattgc 28326487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28504222 - 28504123
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    |||||| |||||| |||||||||||| |||||||||||||| ||||||| | ||||||||||| ||||||||||||||||| |||| ||| |||||||||    
T  28504222 aatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaacctgcaattgc 28504123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28228060 - 28227961
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    |||||||||||||| |||||| |||| || ||||||||||||||||||| | || |||||||||||||||||||||||||| |||| |||  ||||||||    
T  28228060 aatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaacccgcaattgc 28227961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28182226 - 28182127
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    ||||||||||| |  |||||| |||| |||||||||||||||||||||| | || ||||||||||||||||||| |||||| |||| ||| |||||||||    
T  28182226 aatcccatgacctactagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaattcctccagccaaaacctgcaattgc 28182127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28243903 - 28243804
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    ||||||||||||| |||||||||||  |||||||||||||| ||||||| | || |||||||| ||||||||||||||||| || | ||| |||||||||    
T  28243903 aatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaacctgcaattgc 28243804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 27610195 - 27610325
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    ||||||||||  |||||||| |||| ||||||||||| |||||| ||| |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  27610195 atcccatgacaggttagcaagtgtttgtctcgagtggcaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgct 27610294  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| |||||||| || ||||||||||||||    
T  27610295 tcatattgtcaacatcatcaagaatcaaaag 27610325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 27717574 - 27717704
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    ||||||||||  ||||| || |||| |||||||||||||||||| ||| |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  27717574 atcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgct 27717673  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| |||||||| || ||||||||||||||    
T  27717674 tcatattgtcaacatcatcaagaatcaaaag 27717704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 31285666 - 31285536
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    |||||||||||  |||| || |||| |||||||||||||||||| ||| |||| ||| | || ||||||||||||||||| |||| | | |||| |||      
T  31285666 atcccatgactacttagtaagtgtttgtctcgagtggtaatgatgactctgcttccacggccgaaccaatcaagtcctccagccaaagcatgcagttgat 31285567  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| |||||||| || || |||||||||||    
T  31285566 tcatattgtcaacatcatcgagaatcaaaag 31285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 29823291 - 29823218
Alignment:
Q  26 tctaaaatgtcatcatatcttgaatcacctatactatcttt-aaaagctttccacctaaataattcaagggatt 98  Q
    ||||||||| || |||| ||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  29823291 tctaaaatgccaccatagcttgaatcaactatactattttttaaaagctttccacctaaataatttaagggatt 29823218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 28296846 - 28296913
Alignment:
Q  168 gagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    ||||||||||||||||| | || ||| |||||||||||||||||| ||| |||| |||||||||||||    
T  28296846 gagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaacttgcaattgc 28296913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 28515227 - 28515160
Alignment:
Q  168 gagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    ||||||||||||||||| | || ||| |||||||||||||||||| ||| |||| |||||||||||||    
T  28515227 gagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaacttgcaattgc 28515160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 28240450 - 28240377
Alignment:
Q  148 tgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||| ||| |||||||||||||||||| ||| ||||| ||||||  ||||||||||| ||||| ||||    
T  28240450 tgttagcaaacgtttgtctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagcca 28240377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 28186487 - 28186411
Alignment:
Q  151 tagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataactt 227  Q
    |||||| |||| ||||||||||||||||||||| || || |||||||||||||||  || |||||| |||| |||||    
T  28186487 tagcaattgtttgtctcgagtggtaatgatcacaatactaccaggaccaaaccaacgaaatcctccagccaaaactt 28186411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 26862687 - 26862608
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcc 216  Q
    |||||||| | |||||| || ||||  ||||||||||||||||| ||| | || ||| ||||||||||||||||||||||    
T  26862687 atcccatggcatgttagtaagtgtttatctcgagtggtaatgatgactctacttccatgaccaaaccaatcaagtcctcc 26862608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 25539620 - 25539566
Alignment:
Q  167 cgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||||| ||| |||| |||||||| ||||||||||||||||| ||||    
T  25539620 cgagtggtaatgatgactctgcttccaggaccgaaccaatcaagtcctccagcca 25539566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 28097517 - 28097611
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgca 230  Q
    |||||||||||||| |||||| | ||  |||||||||||||  |||||| | ||||||| |||||||||||||   ||||| |||||| ||||||    
T  28097517 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccatagcttgca 28097611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 25492394 - 25492471
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcct 214  Q
    ||||||||||| ||||| |  |||| |||||||||||||||||| |||  ||| ||| |||| |||||||||||||||    
T  25492394 atcccatgactggttagtatgtgtttgtctcgagtggtaatgataactccgcttccacgaccgaaccaatcaagtcct 25492471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 26950851 - 26950782
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaa 205  Q
    ||||||||||| || || |||||||| ||| |||||||||||||| ||| |||||||| |||||| ||||    
T  26950851 aatcccatgacatgataacaaatgtttgtcacgagtggtaatgatgactctgctgccacgaccaagccaa 26950782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 26976059 - 26975990
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaa 205  Q
    ||||| ||||| || |||||| |||| |||||||||||||||||| ||| |||||||| |||||| ||||    
T  26976059 aatccgatgacctgatagcaattgtttgtctcgagtggtaatgatgactctgctgccatgaccaagccaa 26975990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 26647586 - 26647502
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||||  ||||| || ||||  ||||| ||||| ||||| ||| |||| |||||||| ||||||||||||||||| ||||    
T  26647586 atcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagcca 26647502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 26753554 - 26753470
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||||  ||||| || ||||  ||||| ||||| ||||| ||| |||| |||||||| ||||||||||||||||| ||||    
T  26753554 atcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagcca 26753470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 26803549 - 26803469
Alignment:
Q  141 catgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||| || || ||||||| |||||||||||||||||| ||  |||| ||| | |||||||||||| ||||||| ||||    
T  26803549 catgactggtcagtaaatgtttgtctcgagtggtaatgatgaccctgcttccatggccaaaccaatcaggtcctccagcca 26803469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 26938159 - 26938067
Alignment:
Q  114 catctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaat 206  Q
    ||||||||  |||| |||| | ||||||||||| || ||||||||||| ||||||||||||||  || ||| |||| ||| |||||| |||||    
T  26938159 catctactacatatattctttcaatcccatgacatgatagcaaatgtttgtctcgagtggtaacaatgactttgcttccatgaccaagccaat 26938067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 27337170 - 27337254
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||||  ||||| || ||||  ||||| ||||| ||||| ||| |||| |||||||| ||||||||||||||||| ||||    
T  27337170 atcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagcca 27337254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 27397910 - 27397994
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||||  ||||| || ||||  ||||| ||||| ||||| ||| |||| |||||||| ||||||||||||||||| ||||    
T  27397910 atcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagcca 27397994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 28782208 - 28782124
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||| |||| || |||| |||||||||||||||||| ||  |||| ||| | || ||||||||| ||||||| ||||    
T  28782208 atcccatgacttcttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgcca 28782124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 27426714 - 27426817
Alignment:
Q  164 tctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatca 263  Q
    ||||| ||||| ||||| |||  ||| |||||||| |||||||||| |||||| |||| | | | || |||| |||| ||||||||||| || |||||||    
T  27426714 tctcgggtggtgatgatgactcggcttccaggaccgaaccaatcaactcctccagccaaagcattcagttgcttcatattgtcaacgtcatcgagaatca 27426813  T
Q  264 aaag 267  Q
    ||||    
T  27426814 aaag 27426817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 25074975 - 25074913
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggacc 198  Q
    ||||||||||  || || |||||||| |||||||||||||||||| ||| |||||||| ||||    
T  25074975 aatcccatgagatgataacaaatgtttgtctcgagtggtaatgatgactctgctgccacgacc 25074913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 25484136 - 25484082
Alignment:
Q  167 cgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||||| ||| |||| ||| |||| ||||||||||||||||| ||||    
T  25484136 cgagtggtaatgatgactctgcttccatgaccgaaccaatcaagtcctccagcca 25484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 25511969 - 25511915
Alignment:
Q  167 cgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||||| ||| |||| |||||||| ||||| ||||||||||| ||||    
T  25511969 cgagtggtaatgatgactctgcttccaggaccgaaccagtcaagtcctccagcca 25511915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 26056999 - 26056945
Alignment:
Q  167 cgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||||| ||| |||| ||| |||| ||||||||||||||||| ||||    
T  26056999 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagcca 26056945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 26076969 - 26076915
Alignment:
Q  167 cgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||||| ||| |||| ||| |||| ||||||||||||||||| ||||    
T  26076969 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagcca 26076915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 26885147 - 26885093
Alignment:
Q  167 cgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||||| ||  |||| ||| |||||||||||||||||||||| ||||    
T  26885147 cgagtggtaatgatgaccctgcttccacgaccaaaccaatcaagtcctccagcca 26885093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 28787345 - 28787215
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    |||||||||||| |||| || |||| ||||||||| |||||||| ||  |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  28787345 atcccatgacttcttagtaagtgtttgtctcgagtcgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 28787246  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| | |||||| || || |||||||||||    
T  28787245 tcatatcgtcaacatcatcgagaatcaaaag 28787215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 28793466 - 28793336
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    |||||||||||| |||| || |||| ||||||||| |||||||| ||  |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  28793466 atcccatgacttcttagtaagtgtttgtctcgagtcgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 28793367  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| | |||||| || || |||||||||||    
T  28793366 tcatatcgtcaacatcatcgagaatcaaaag 28793336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 31289375 - 31289313
Alignment:
Q  138 tcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaa 200  Q
    ||||||||| || |||||| |||| ||||| |||||||||||| ||| |||| ||||||||||    
T  31289375 tcccatgacctgatagcaattgtttgtctcaagtggtaatgatgactctgcttccaggaccaa 31289313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 26812635 - 26812574
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggacc 198  Q
    |||||||||| || ||||||||||  |||||||||||||||||| ||| | || ||||||||    
T  26812635 atcccatgacatgatagcaaatgtctgtctcgagtggtaatgatgactctacttccaggacc 26812574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 27592123 - 27592180
Alignment:
Q  164 tctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||| ||||| ||||| ||| |||| |||||||| ||||||||||||||||| ||||    
T  27592123 tctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagcca 27592180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 27680028 - 27679927
Alignment:
Q  166 tcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatcaaa 265  Q
    ||||||||||||||| ||| |||| |||   || ||||||||||||||||| |||| | | |||| |||| |||  |||||||| || || |||||||||    
T  27680028 tcgagtggtaatgatgactctgcttccacatccgaaccaatcaagtcctccagccaaagcatgcagttgcttcaaattgtcaacatcatcgagaatcaaa 27679929  T
Q  266 ag 267  Q
    ||    
T  27679928 ag 27679927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 27697688 - 27697745
Alignment:
Q  164 tctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| ||||    
T  27697688 tctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcctccagcca 27697745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 27530376 - 27530460
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||| |  |||| || |||| || |||||| |||||||| ||| | || |||||||| ||||||||||||||||| ||||    
T  27530376 atcccatgaatctttagtaagtgtttgtttcgagtagtaatgatgactctactcccaggaccgaaccaatcaagtcctccagcca 27530460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 29477176 - 29477224
Alignment:
Q  173 gtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||  ||| |||| |||||||||||||||||||||||||| ||||    
T  29477176 gtaatgacaactctgctaccaggaccaaaccaatcaagtcctccagcca 29477224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 29822303 - 29822267
Alignment:
Q  176 atgatcactatgctgccaggaccaaaccaatcaagtc 212  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  29822303 atgattactatgctgcaaggaccaaaccaatcaagtc 29822267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 35835 - 35736
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||||| | || ||||||||||||||||||| | ||||||||| ||| |||||||||    
T  35835 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgc 35736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28558 - 28459
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    |||||||||||||| |||||| |||| || ||||||||||||||||||| | || |||||||||||||||||||||||||| |||| |||  ||||||||    
T  28558 aatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaacccgcaattgc 28459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 44065 - 43966
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    ||||||||||||| |||||||||||  |||||||||||||| ||||||| | || |||||||| ||||||||||||||||| || | ||| |||||||||    
T  44065 aatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaacctgcaattgc 43966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 40612 - 40539
Alignment:
Q  148 tgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||| ||| |||||||||||||||||| ||| ||||| ||||||  ||||||||||| ||||| ||||    
T  40612 tgttagcaaacgtttgtctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagcca 40539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 57368 - 57467
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 235  Q
    ||||||||||| || |||||| |||| |||||||||||||||||||||| | || |||||||||||||||||||||||||| |||| ||| || ||||||    
T  57368 aatcccatgacctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgc 57467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 275
Target Start/End: Original strand, 5089945 - 5090163
Alignment:
Q  57 tactatctttaaaagctttccacctaaataattcaagggattctatcctatttagcgcatctacttgatattttctatgaatcccatgacttgttagcaa 156  Q
    |||||| ||||||||| |||||||| ||||||| ||| | |||  ||  |||||   |||||||||  ||| || ||| ||||||||||| | |||||||    
T  5089945 tactatttttaaaagccttccaccttaataattgaagagcttcgttctcatttaaaccatctacttcgtatgttatatcaatcccatgacattttagcaa 5090044  T
Q  157 atgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtca 256  Q
     |||| |||||||||||||||||| ||| |||||||| |||||||||||||| || |||| |||| ||| || | |||  |||  |||||||  || ||     
T  5090045 gtgtttgtctcgagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaacctgtagttgtttcagtttgtcaatatcatcg 5090144  T
Q  257 agaatcaaaagtactttct 275  Q
    ||||||||||| |||||||    
T  5090145 agaatcaaaagaactttct 5090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 18074841 - 18074738
Alignment:
Q  164 tctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatca 263  Q
    ||||| ||||| ||||| |||  ||| |||||||| |||||||||| |||||| |||| | | | || |||| |||| ||||||||||| || |||||||    
T  18074841 tctcgggtggtgatgatgactcggcttccaggaccgaaccaatcaactcctccagccaaagcattcagttgcttcatattgtcaacgtcatcgagaatca 18074742  T
Q  264 aaag 267  Q
    ||||    
T  18074741 aaag 18074738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 16691997 - 16691876
Alignment:
Q  114 catctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcc 213  Q
    |||| |||| |||| |||||| ||| |||||||||||||| || |||| |||||||||||||||||| ||| | || |||||||||||||||||  |  |    
T  16691997 catccacttcatatattctatcaataccatgacttgttagtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaatcgggctc 16691898  T
Q  214 tcccgccataacttgcaattgc 235  Q
    |||  |||||||||||||||||    
T  16691897 tccaaccataacttgcaattgc 16691876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 17992267 - 17992358
Alignment:
Q  114 catctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaa 205  Q
    ||||||||| |||| || | | ||||||||||| ||||| |||||||| |||||||||||||||||| ||| |||||||| |||||| ||||    
T  17992267 catctacttcatatattgttttaatcccatgacatgttaacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccaagccaa 17992358  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 3280767 - 3280687
Alignment:
Q  136 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcc 216  Q
    |||||||||||||| || ||| |||| |||||||||||||||||||||  | || |||  || |||||||||||| |||||    
T  3280767 aatcccatgacttgataacaagtgtttgtctcgagtggtaatgatcaccctactaccaacactaaaccaatcaagccctcc 3280687  T

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Target: scaffold0349 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 2614 - 2744
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    ||||||||||  ||||| || |||| |||||||||||||||||| ||| |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  2614 atcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgct 2713  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| |||||||| || ||||||||||||||    
T  2714 tcatattgtcaacatcatcaagaatcaaaag 2744  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 16441194 - 16441092
Alignment:
Q  106 atttagcgcatctacttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaa 205  Q
    |||||| ||||| |||| |||| |||| | || ||||||||||| |||||| |||| ||| ||||| |||||||| ||| |||| ||||||||| |||||    
T  16441194 atttagtgcatccacttcatatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaa 16441095  T
Q  206 tca 208  Q
    |||    
T  16441094 tca 16441092  T

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Target: scaffold0277 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 3787 - 3871
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    |||||||||||| ||||||| |||| |||||||||||||||||| ||  |||| ||| | |||||||||||| || |||| ||||    
T  3787 atcccatgacttcttagcaagtgtttgtctcgagtggtaatgatgaccctgcttccaaggccaaaccaatcaggttctcctgcca 3871  T

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Target: scaffold0277; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 12750 - 12880
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    |||||||||||| |||| || |||| |||||||||||||||||| ||  |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  12750 atcccatgacttcttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 12849  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| | |||||| || || |||||||||||    
T  12850 tcatatcgtcaacatcatcgagaatcaaaag 12880  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 28126750 - 28126834
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||||  ||||| || ||||  ||||||||||||||||| ||| |||| ||| |||| ||||||||||||||||| ||||    
T  28126750 atcccatgacaggttagtaagtgtttctctcgagtggtaatgatgactttgcttccacgaccgaaccaatcaagtcctccagcca 28126834  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 26137013 - 26136927
Alignment:
Q  119 acttgatattttctatgaatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaa 205  Q
    |||| |||| |||| | ||||||||||| || ||||||||||| |||||| ||||||||||| ||| | || |||||||||| ||||    
T  26137013 acttcatatattcttttaatcccatgacatgatagcaaatgtttgtctcgggtggtaatgatgactctactcccaggaccaagccaa 26136927  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 28163451 - 28163535
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgcca 221  Q
    ||||||||||  ||||| || |||| |||||||||||||||||| ||  |||| ||| |||| |||||||| |||||||| ||||    
T  28163451 atcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacgaccgaaccaatcgagtcctccagcca 28163535  T

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Target: scaffold0419 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 8594 - 8464
Alignment:
Q  137 atcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcc 236  Q
    |||||||||||| |||| || |||| |||||||||||||||||| ||  |||| ||| | || ||||||||| ||||||| |||| | | || | ||||     
T  8594 atcccatgacttcttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 8495  T
Q  237 tcatgttgtcaacgtcgtcaagaatcaaaag 267  Q
    |||| | |||||| || || |||||||||||    
T  8494 tcatatcgtcaacatcatcgagaatcaaaag 8464  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 60649 - 60546
Alignment:
Q  164 tctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgcctcatgttgtcaacgtcgtcaagaatca 263  Q
    ||||| ||||| ||||| |||  ||| |||||||| |||||||||| |||||| |||| | | | || |||| |||| ||||||||||| || |||||||    
T  60649 tctcgggtggtgatgatgactcggcttccaggaccgaaccaatcaactcctccagccaaagcattcagttgcttcatattgtcaacgtcatcgagaatca 60550  T
Q  264 aaag 267  Q
    ||||    
T  60549 aaag 60546  T

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