View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9958_low_4 (Length: 270)
Name: NF9958_low_4
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9958_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 11906249 - 11905998
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatatatgaaagaaatata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11906249 |
tacgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatatatgaaagaaatata |
11906150 |
T |
|
| Q |
101 |
gaggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtttttaattaaggaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11906149 |
gaggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtttttaattaaggaa |
11906050 |
T |
|
| Q |
201 |
acattatttgaggaactgattggtggctgagtgtatgttttgcagtcatata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11906049 |
acattatttgaggaactgattggtggctgagtgtatgttttgcagtcatata |
11905998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 26716304 - 26716275
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
26716304 |
tacgtcatccattttgaagtatcgaggctt |
26716275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 26986044 - 26986015
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
26986044 |
tacgtcatccattttgaagtatcgaggctt |
26986015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 52027727 - 52027661
Alignment:
| Q |
104 |
gaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaatta |
170 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||| ||||||||||||| ||||||| |
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|
| T |
52027727 |
gaaataagtgttgattattttgaaagtaccaaaatattcttgaataataaaaattccatcaaaatta |
52027661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22289808 - 22289837
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
22289808 |
tacgtcatccattttgaagtatcgaggctt |
22289837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 47642048 - 47642019
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
47642048 |
tacgtcatccattttgaagtatcgaggctt |
47642019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32759404 - 32759375
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32759404 |
tacgtcatccattttgaagtatcgaggctt |
32759375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4355356 - 4355327
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4355356 |
tacgtcatccattttgaagtatcgaggctt |
4355327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10822433 - 10822404
Alignment:
| Q |
1 |
tacgtcatccattttgaagtatcgaggctt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10822433 |
tacgtcatccattttgaagtatcgaggctt |
10822404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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