View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9958_low_6 (Length: 252)
Name: NF9958_low_6
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9958_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7978213 - 7978464
Alignment:
| Q |
1 |
tatcaacatcatatccttccaatttcaaataagcaacaaagacaaccttgtatgcagtgttatgtttcatgcagagccatnnnnnnntgttccaaaaagt |
100 |
Q |
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| T |
7978213 |
tatcaacatcatatccttccaatttcaaataagcaacaaagacaaccttgtatgcagtgttatgtttcatgcagagccataaaaaaatgttccaaaaagt |
7978312 |
T |
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| Q |
101 |
gcaacaatggacaatgatgacaatggacgatggtgacaatttgtacaagatgatttg------agaagttcaacaatggatgacataaagagagaatata |
194 |
Q |
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| T |
7978313 |
gcaacaatggacaatgatgacaatggacgatggtgacaatttgtacaagatgatttgagtcctagaagttcaacaatgaatgacataaagagagaatata |
7978412 |
T |
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| Q |
195 |
gaacaatg-----------tcatcctgatttgtgtcgtgatcatggggtagg |
235 |
Q |
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| T |
7978413 |
gaacaatggctctttagtatcatcctgatttgtgtcgtgatcatggggtagg |
7978464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 16553249 - 16553308
Alignment:
| Q |
9 |
tcatatccttccaatttcaaataagcaacaaagacaaccttgtatgcagtgttatgtttc |
68 |
Q |
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| T |
16553249 |
tcatatcattccactctcaaataagctacaaagacaaccttgtatgcagttttttgtttc |
16553308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 1516317 - 1516275
Alignment:
| Q |
160 |
aagttcaacaatggatgacataaagagagaatatagaacaatg |
202 |
Q |
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| T |
1516317 |
aagtgcaacaatggatgacataaagagagcatatagaacaatg |
1516275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 1530547 - 1530505
Alignment:
| Q |
160 |
aagttcaacaatggatgacataaagagagaatatagaacaatg |
202 |
Q |
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| T |
1530547 |
aagtgcaacaatggatgacataaagagagcatatagaacaatg |
1530505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1498726 - 1498683
Alignment:
| Q |
1 |
tatcaacatcatatccttccaatttcaaataagcaacaaagaca |
44 |
Q |
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| T |
1498726 |
tatccacatcatatcctttcactttcaaataagcaacaaagaca |
1498683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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