View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9958_low_8 (Length: 244)
Name: NF9958_low_8
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9958_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 41548256 - 41548043
Alignment:
| Q |
14 |
cagagaaacgagattaataaggcctaaattcaacaacaattactgtgaaggcatagatcatcgtaattttaaaaacgaaaatggaaaatcaattgataat |
113 |
Q |
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| T |
41548256 |
cagagaaacgagattaataaggcctaaattcaacaacaattactgtgaaggcataaatcatggtaattttaaaaacgaaaatggaaaatccattgataat |
41548157 |
T |
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| Q |
114 |
atctgtaatcatttcgtcaaatgggagaataagtgcatgtagtactnnnnnnntaaaccctaggagtaataattggtaaacaatgagaacagattcaaat |
213 |
Q |
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| T |
41548156 |
atctgtaatcatttcgtcaaatgggagaataagtgcatgtagtactaaaaaaataaaccctaggagtaataattggtaaacaatgagaacagattcaaac |
41548057 |
T |
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| Q |
214 |
gaagacgcaatggt |
227 |
Q |
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|||||||||||||| |
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| T |
41548056 |
gaagacgcaatggt |
41548043 |
T |
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