View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9958_low_9 (Length: 233)
Name: NF9958_low_9
Description: NF9958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9958_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 9967152 - 9967368
Alignment:
| Q |
12 |
cagcacagaagtcttgtatattttc-ttagtagtgcatctgctgaagtatttgccaatttagctctatgtccatttgaagctgttaaagtcagggttcaa |
110 |
Q |
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| T |
9967152 |
cagcacagaagtcttgtatattttccttagtagtgcatctgctgaagtatttgccaatttagctctatgtccatttgaagctgttaaagtcagggttcaa |
9967251 |
T |
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| Q |
111 |
gcacaacctagttatgctaagggcatgtttgacggctttccaaaggtatatgcagctgaaggcgcacgagggtaaagaaagatttcaatatgttcgttta |
210 |
Q |
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| T |
9967252 |
gcacaacctagttatgctaagggcatgtttgacggctttccaaaggtatatgcagctgaaggcgcacgagggtaaagaaagatttcaatatgttcgttta |
9967351 |
T |
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| Q |
211 |
ctacttgatgtccatct |
227 |
Q |
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| T |
9967352 |
ctacttgatgtccatct |
9967368 |
T |
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