View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_high_11 (Length: 369)
Name: NF9959_high_11
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 31055524 - 31055861
Alignment:
| Q |
19 |
cattctttgtttttcagtcataggaattaattcaattcctcttactctttctaattggttggtttctaccagggtttccatcacatgccagaaacaagag |
118 |
Q |
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| T |
31055524 |
cattctttgtttttcagtcataggaattaattcaattcctcttactctttctaattggttggtttctaccagggtttccatcacatgccagaaacaagag |
31055623 |
T |
|
| Q |
119 |
ggttatgcctttccgaagaacagacagttaccagtgtatggttttcaataccttctgcttttgttttataagattagagaatgttgaagttttcatgtac |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31055624 |
ggttatgcctttccgaagaacagacagttgccagtgtatgattttcaataccttctgcttttgttttataagattagagaatgttgaagttttcatgtac |
31055723 |
T |
|
| Q |
219 |
ttccatttatttatttacgattttctgtttttcaggtacatagatggtcaaaaattggaggtcatcgattaatagggatgcgaagtcaacctcaaaagtt |
318 |
Q |
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| T |
31055724 |
ttccatttatttatttacgattttctgtttttcaggtacatagatggtcaaaaattggaggtcatcgattaatagggatgcgaagtcaacctcaaaagtt |
31055823 |
T |
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| Q |
319 |
gattagaaaatgtgaagttacagctattcttgttctct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31055824 |
gattagaaaatgtgaagttacagctattcttgttctct |
31055861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 34742869 - 34742763
Alignment:
| Q |
248 |
tttcaggtacatagatggtcaaaaattggaggtcatcgattaatagggatgcgaagtcaacctcaaaagttgattagaaaatgtgaagttacagctattc |
347 |
Q |
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|||||| |||||||| || ||| ||||||||| ||| || | || |||||| ||| ||||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
34742869 |
tttcagatacatagaaggccaagaattggaggccatagacttattgggatgagaactcaacctcaaaagctgataagaaaatgtgaagttacagcaattc |
34742770 |
T |
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| Q |
348 |
ttgttct |
354 |
Q |
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||||||| |
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| T |
34742769 |
ttgttct |
34742763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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