View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9959_high_13 (Length: 359)

Name: NF9959_high_13
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9959_high_13
NF9959_high_13
[»] chr3 (14 HSPs)
chr3 (18-359)||(22358813-22359154)
chr3 (21-351)||(22368725-22369053)
chr3 (57-359)||(22636314-22636619)
chr3 (103-359)||(22632673-22632935)
chr3 (169-359)||(22631277-22631467)
chr3 (20-185)||(22437604-22437769)
chr3 (174-359)||(22468756-22468941)
chr3 (149-321)||(22443597-22443769)
chr3 (37-279)||(22354262-22354497)
chr3 (16-156)||(22445499-22445638)
chr3 (184-288)||(22638017-22638121)
chr3 (189-277)||(22437536-22437624)
chr3 (98-140)||(22371143-22371185)
chr3 (103-139)||(22638148-22638184)
[»] chr4 (1 HSPs)
chr4 (225-255)||(29611145-29611175)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 22359154 - 22358813
Alignment:
Q  18 aaaactcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcacagttcaatctcattcacaatattagcaaattgaaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22359154 aaaactcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcacagttcaatctcactcacaatattagcaaattgaaatc 22359055  T
Q  118 aaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaagga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22359054 aaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaagga 22358955  T
Q  218 agcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22358954 agcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaagaatagaagtcttcatcaacgatgcggataaaagggct 22358855  T
Q  318 gatgatgtggaagacaagaaaatcaaagacatgatcaagcag 359  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  22358854 gatgatgtagaagacaagaaaatcaaagacatgatcaagcag 22358813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 22369053 - 22368725
Alignment:
Q  21 actcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcacagttcaatctcattcacaatattagcaaattgaaatcaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||  ||||||||||||||||||    
T  22369053 actcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcaccattcaatctcactcacaat--tagcaaattgaaatcaaa 22368956  T
Q  121 tatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagc 220  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||    
T  22368955 tatacaacaaaatgtgtgactgtaaagctgcacttgcctgcgctcgtgataacttgcttccactagcccgtgatcatttgcttccactcttgaaggaagc 22368856  T
Q  221 attcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgat 320  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||  || |||| |||||||||||||||||||| |||  |||||    
T  22368855 attcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagcattgaagacttcatcaacgatgcggatagaagatctgat 22368756  T
Q  321 gatgtggaagacaagaaaatcaaagacatga 351  Q
    ||||| |||||||||||||||||||||||||    
T  22368755 gatgtagaagacaagaaaatcaaagacatga 22368725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 57 - 359
Target Start/End: Complemental strand, 22636619 - 22636314
Alignment:
Q  57 aaggactatgagctttttcctcacagttcaatctcattcacaatattag---caaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcac 153  Q
    ||||||||  ||||||||||||||  |||||||||| |||||||| |||   |||||| |||||||||||||||||||||||||||||||||||||||||    
T  22636619 aaggactaatagctttttcctcaccattcaatctcactcacaatactagtagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaaagatgcac 22636520  T
Q  154 ttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636519 ttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaat 22636420  T
Q  254 tgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtggaagacaagaaaatcaaagacatgatc 353  Q
    || ||||||| |||| ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  22636419 tgcagaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatc 22636320  T
Q  354 aagcag 359  Q
    ||||||    
T  22636319 aagcag 22636314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 103 - 359
Target Start/End: Complemental strand, 22632935 - 22632673
Alignment:
Q  103 tagcaaattgaaatcaaatatacaacaaaatgtgtgac------tgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatca 196  Q
    ||||||||| |||||||| ||||||||||||||||||       ||| | | |||| || |||||||| |||||||||||||||||||||||||||||||    
T  22632935 tagcaaattaaaatcaaagatacaacaaaatgtgtgataaaatgtgtgacgctgcattttcctgcgcttgtgatcatttgcttccactagcccgtgatca 22632836  T
Q  197 tttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatc 296  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||| ||||||||||||    
T  22632835 cttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgaaagatgaacttgaaagaattgaagtcttcatc 22632736  T
Q  297 aacgatgcggataaaagggctgatgatgtggaagacaagaaaatcaaagacatgatcaagcag 359  Q
    ||||||| ||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  22632735 aacgatgtggatagaacagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcag 22632673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 169 - 359
Target Start/End: Complemental strand, 22631467 - 22631277
Alignment:
Q  169 atcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaaga 268  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22631467 atcatttgcttccactagcccgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaaga 22631368  T
Q  269 ggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtggaagacaagaaaatcaaagacatgatcaagcag 359  Q
     ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22631367 tgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcag 22631277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 22437769 - 22437604
Alignment:
Q  20 aactcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcacagttcaatctcattcacaatattagcaaattgaaatcaa 119  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  22437769 aactcgaagtcaatgatctttatgttatataatcttgaaggactatgagctttttcctcacaattcaatctcactcacaatattagcaaattaaaatcaa 22437670  T
Q  120 atatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccacta 185  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22437669 atatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta 22437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 174 - 359
Target Start/End: Complemental strand, 22468941 - 22468756
Alignment:
Q  174 ttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaac 273  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||  ||| |||||||||| ||||||| |||| ||||    
T  22468941 ttgcttccactagcccgtgatcatttgcttccgctcttcaaggaagcattcaacatgattaggggtaacccgaaagaaattgtagaattgaaagatgaac 22468842  T
Q  274 tagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtggaagacaagaaaatcaaagacatgatcaagcag 359  Q
    ||||||  || |||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  22468841 tagaaagcattgaagacttcatcaacgatgcggatagaagagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcag 22468756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 149 - 321
Target Start/End: Complemental strand, 22443769 - 22443597
Alignment:
Q  149 tgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaa 248  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22443769 tgcactttcctgcgctcgtgataacttgcttccactagcccgtgatcatttgcttccaatcttgaaggaagcattcaacatgattaagggtgtcccaaaa 22443670  T
Q  249 gaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatg 321  Q
    ||||||| ||||||| |||| |||||||||| ||| |||   ||||||||| |||| |||| || ||||||||    
T  22443669 gaaattgcagaattgaaagatgaactagaaagaattgaaaaattcatcaacaatgcagatagaatggctgatg 22443597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 279
Target Start/End: Complemental strand, 22354497 - 22354262
Alignment:
Q  37 ctttatgctatataatcttgaaggactatgagctttttcctcacagttcaatctcattcacaatattagcaaattgaaatcaaatatacaacaaaatgtg 136  Q
    ||||| ||||| ||||||||||||| ||  ||| || |||||||   ||| ||||| ||| || ||||||||||| |||||||| |||||||||||||||    
T  22354497 ctttacgctatttaatcttgaaggattaatagcattctcctcaccactca-tctcactcataacattagcaaattcaaatcaaagatacaacaaaatgtg 22354399  T
Q  137 tgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattagg 236  Q
    ||||  |      |||||| ||||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||    
T  22354398 tgacact------gcactttcctgcgcccgtgatcacttgcttccgctagcccatgatcatttgcttccactcttgaaggaagcattcaatatgattagg 22354305  T
Q  237 ggtgtcccaaaagaaattgaagaattgcaagaggaactagaaa 279  Q
    | ||||||||||||||||| ||||||| |||||||||| ||||    
T  22354304 gttgtcccaaaagaaattgcagaattgaaagaggaacttgaaa 22354262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 22445638 - 22445499
Alignment:
Q  16 caaaaactcgaagtcaatgatctttatgctatataatcttgaaggactatgagctttttcctcacagttcaatctcattcacaatattagcaaattgaaa 115  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||| |||||    ||| |||||| ||||||||||||||||||||||    
T  22445638 caaaaactcgaagtccatgatctttatgttatataatcttgaaggactaatagctttgtcctcgtcattc-atctcactcacaatattagcaaattgaaa 22445540  T
Q  116 tcaaatatacaacaaaatgtgtgactgtaaagatgcacttg 156  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  22445539 tcaaatatacaacaaaatgtgtgaccgtaaagctgcacttg 22445499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 22638121 - 22638017
Alignment:
Q  184 tagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataat 283  Q
    |||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||    
T  22638121 tagctcgtgataaattgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaat 22638022  T
Q  284 agaag 288  Q
     ||||    
T  22638021 tgaag 22638017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 22437624 - 22437536
Alignment:
Q  189 cgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactaga 277  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||    
T  22437624 cgtgatcatttgcttccactattaaaggtagcattcaacatgattaggggtgtcccaaaagaaattgcagatttgaaagatgaactaga 22437536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 22371185 - 22371143
Alignment:
Q  98 aatattagcaaattgaaatcaaatatacaacaaaatgtgtgac 140  Q
    |||||||||||||| ||||| || |||||||||||||||||||    
T  22371185 aatattagcaaattcaaatcgaagatacaacaaaatgtgtgac 22371143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 22638184 - 22638148
Alignment:
Q  103 tagcaaattgaaatcaaatatacaacaaaatgtgtga 139  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  22638184 tagcaaattaaaatcaaagatacaacaaaatgtgtga 22638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 29611175 - 29611145
Alignment:
Q  225 aacatgattaggggtgtcccaaaagaaattg 255  Q
    |||||||||||||||||||||||||||||||    
T  29611175 aacatgattaggggtgtcccaaaagaaattg 29611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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