View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_high_23 (Length: 279)
Name: NF9959_high_23
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2214809 - 2214549
Alignment:
| Q |
1 |
ctctctaaagcacatgtattttagcaaagaaagaagataataaaaaacacttactcttgagatatttggttgcatttggaaatgtcttcaatagctgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214809 |
ctctctaaagcacatgtattttagcaaagaaagaagataataaaaaacacttactcttgagatatttggttgcatttggaaatgtcttcaatagctgaaa |
2214710 |
T |
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| Q |
101 |
agtttttaaaataaagatagggatcagacagactgttcaaagaaaagtgtattcaactctctgatccttcccaaaaataaactactaagaaatagattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214709 |
agtttttaaaataaagatagggatcagacagactgttcaaagaaaagtgtattcaactctctgatccttcccaaaaataaactactaagaaatagattat |
2214610 |
T |
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| Q |
201 |
ttcaataaatgaacctcaggtatcttcttttcttctgcaaatgcaattgagacctctgcat |
261 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214609 |
ttcaatagatgaacctcaggtatcttcttttcttctgcaaatgcaattgagacctctgcat |
2214549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2202214 - 2201954
Alignment:
| Q |
1 |
ctctctaaagcacatgtattttagcaaagaaagaagataataaaaaacacttactcttgagatatttggttgcatttggaaatgtcttcaatagctgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2202214 |
ctctctaaagcacatgtattttagcaaagaaagaagagaataaaaaacacttactcttgagatattttgttgcatttggaaatgtcttcaatagctgaaa |
2202115 |
T |
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| Q |
101 |
agtttttaaaataaagatagggatcagacagactgttcaaagaaaagtgtattcaactctctgatccttcccaaaaataaactactaagaaatagattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||| ||||||||| || |
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| T |
2202114 |
agtttttaaaataaagatagggatcagacagactgttcaaagaaaacggtacctaactctctgatccttcccaaaaataaatttctatgaaatagataat |
2202015 |
T |
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| Q |
201 |
ttcaataaatgaacctcaggtatcttcttttcttctgcaaatgcaattgagacctctgcat |
261 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2202014 |
ttcaatatatgaacctcaggtatcttcttttcttctgcaaatgcaattgagacctctgcat |
2201954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 41931969 - 41932034
Alignment:
| Q |
196 |
attatttcaataaatgaacctcaggtatcttcttttcttctgcaaatgcaattgagacctctgcat |
261 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |
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| T |
41931969 |
attaattcaatagatgaacctcaggtatcttcttttcttcgacaaatgctatcgagacctctgcat |
41932034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 41931828 - 41931884
Alignment:
| Q |
49 |
acttactcttgagatatttggttgcatttggaaatgtcttcaatagctgaaaagttt |
105 |
Q |
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|||||||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
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| T |
41931828 |
acttactcttgagatactctgctgcctttggaaatgtcttcaatagctgaaaagttt |
41931884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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