View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_high_31 (Length: 236)
Name: NF9959_high_31
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3359548 - 3359329
Alignment:
| Q |
1 |
actacggatcaaccaagagacagcggacactgaaaagtcgtcctgctggtacgatcgtaattgatgataatgctattgttctttatgaaggtggcataac |
100 |
Q |
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| T |
3359548 |
actacggatcaaccaagaggcagcggacactgaaaagtcgtcctgctggtacgatcgtaattgatgataatgctattgttctttatgaaggtggcataac |
3359449 |
T |
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| Q |
101 |
aaattcagatagggttccgacggataatgcaagccaatataatggcaaggagctttcgttggtggattaccatagtgagagatcacaaaccttaatgaaa |
200 |
Q |
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| T |
3359448 |
aaattcagatagggttccgacggataatgcaagccaatataatggcaaggagctttcgttggtggattaccataatgagagatcacaaaccttaatgaaa |
3359349 |
T |
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| Q |
201 |
gagacattggtcgtgttgaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
3359348 |
gagacattggtcgtgttgaa |
3359329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 22066693 - 22066642
Alignment:
| Q |
59 |
aattgatgataatgctattgttctttatgaaggtggcataacaaattcagat |
110 |
Q |
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|||||||| ||||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
22066693 |
aattgatgctaatgctattgttgtttatgagggtgacataacaaattcagat |
22066642 |
T |
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