View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9959_high_36 (Length: 201)
Name: NF9959_high_36
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 43077251 - 43077425
Alignment:
| Q |
11 |
cagagagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43077251 |
cagagagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaact |
43077350 |
T |
|
| Q |
111 |
cctaatcctggagcaaaaggacagacactaggaacttatggttctgcaacttttgcagtgaattcaccttatttc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43077351 |
cctaatcctggagcaaaaggacagacactaggaacttatggttcggcaacttttgcagtgaattcaccttatttc |
43077425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 33965867 - 33965778
Alignment:
| Q |
15 |
gagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgct |
104 |
Q |
| |
|
|||||||||| ||||||| | |||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33965867 |
gagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacactgct |
33965778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 33965747 - 33965703
Alignment:
| Q |
141 |
ggaacttatggttctgcaacttttgcagtgaattcaccttatttc |
185 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33965747 |
ggaacatatggttcagcaacttttgcagttaattcaccttatttc |
33965703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 20311564 - 20311504
Alignment:
| Q |
55 |
tacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactcctaat |
116 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||| |
|
|
| T |
20311564 |
tacaaggagcaggtgcagataaactaaa-gttcaatggggtgacacttctcaaactcctaat |
20311504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 20311478 - 20311440
Alignment:
| Q |
147 |
tatggttctgcaacttttgcagtgaattcaccttatttc |
185 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
20311478 |
tatggttctgcaacatttgcagtgaattcaccttgtttc |
20311440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University