View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_high_5 (Length: 442)
Name: NF9959_high_5
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 3 - 438
Target Start/End: Original strand, 12838505 - 12838938
Alignment:
| Q |
3 |
aaatagaactaaattgacacagattcttgtgcttgccttcgttcgctgatattcggtcgaattcacgtcttaatccaagatatataattaataacatgct |
102 |
Q |
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||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12838505 |
aaatataactaaattgacacagattcttgtgcttgccttcctcagctgatattcggtcgaattcacgtcttaatccaagatatataattaataacatact |
12838604 |
T |
|
| Q |
103 |
aagaaaaatgtatggtatacaaattgttagagtagtgtatactaaacgccatccccgtgcataaatggtagtatcccccttgataacggttttgactgca |
202 |
Q |
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| T |
12838605 |
aagaaaaatgtatggtatacaaattgttagagttgtgtatactaaacgc-atccccgtgcataaatggtagtatcccccttgataacggttttgactgca |
12838703 |
T |
|
| Q |
203 |
tgctccttccttttggcacttgaaagaaattttttctcttctatacaagtctgtagctcaacgtagttcaattctggtgcagtgtgtgatttcaaatcaa |
302 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
12838704 |
tgctccttccttttggcacttgaa-gaaactttttctcttctatacaagtctgtagctcaacgtagttcaattctggtacagttcgtgatttcagatcaa |
12838802 |
T |
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| Q |
303 |
ctaaaaagttatcggagatgattttcaacatcttgaagaactgagatttatatcttttatacaaagcaaatccagccatctgcggacaaagtagaaatag |
402 |
Q |
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| T |
12838803 |
ctaaaaagttatcggagatgattttcaacatcttcaagaactgagatttatatcttttatacaaagcaaatccagccatctgcggacaaagtagaaatag |
12838902 |
T |
|
| Q |
403 |
ttagtcttaaaagatcatttaatcaaaacaccaaac |
438 |
Q |
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| T |
12838903 |
ttagtcttaaaagatcaattaatcaaaacaccaaac |
12838938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 287 - 418
Target Start/End: Complemental strand, 39179135 - 39179004
Alignment:
| Q |
287 |
tgtgatttcaaatcaactaaaaagttatcggagatgattttcaacatcttgaagaactgagatttatatcttttatacaaagcaaatccagccatctgcg |
386 |
Q |
| |
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|||||||||| |||||||||||| || || ||||||| ||||||||||| |||||||| ||||||||||||||| | | |||||||||||||||||||| |
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| T |
39179135 |
tgtgatttcagatcaactaaaaacttgtctgagatgacgttcaacatctttaagaactgggatttatatcttttaaatagagcaaatccagccatctgcg |
39179036 |
T |
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| Q |
387 |
gacaaagtagaaatagttagtcttaaaagatc |
418 |
Q |
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| T |
39179035 |
ggcaaagtagaattagttaaccttagaagatc |
39179004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 418
Target Start/End: Complemental strand, 39200199 - 39200082
Alignment:
| Q |
301 |
aactaaaaagttatcggagatgattttcaacatcttgaagaactgagatttatatcttttatacaaagcaaatccagccatctgcggacaaagtagaaat |
400 |
Q |
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||||| |||||| || ||||||| ||||||||||| | ||||||| |||||| ||||| | | ||| ||||||||||||||| ||||||||| || | |
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| T |
39200199 |
aactagaaagttgtctgagatgacgttcaacatcttctacgactgagacttatatattttaaatagagcgaatccagccatctgcagacaaagtataatt |
39200100 |
T |
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| Q |
401 |
agttagtcttaaaagatc |
418 |
Q |
| |
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||||| ||||| |||||| |
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| T |
39200099 |
agttaatcttagaagatc |
39200082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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