View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_1 (Length: 713)
Name: NF9959_low_1
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 41786422 - 41786026
Alignment:
| Q |
19 |
gcttgcattgcaggtgtttgtatttctttt-gtaaacatttctaactgttttttctgcgagaatagatccacctatcactttggtaatcaggcctattgt |
117 |
Q |
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| T |
41786422 |
gcttgcgttgcaggtgtttgtatttctttttgtaaacatttctaactgttttttctgcgataatagatccacctatcactttggtaatcaggcctattgt |
41786323 |
T |
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| Q |
118 |
gccaccatattttttaaactggctaaaatcaaaaattgaaaggggtaaagtaagaaaaacaataatagaatgaatcatttttcaattttacaaaacttag |
217 |
Q |
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| T |
41786322 |
gccaccatattttttaaactggctaaaatcaaaaattgaaaggggtaaagtaagaaaaacaataatagaatgaatcatttttcaattttacaaaacttag |
41786223 |
T |
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| Q |
218 |
gagtattggtttccaatgactccatctccatgtacaataataagcagaaaaaagaaagttcatgtcttcttattaactctcatacttgcgaccaaattca |
317 |
Q |
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| T |
41786222 |
gagtattggtttccaatgactccatctccatgtacaataataagcagaaaaaagaaagttcatgtcttcttattaactctcatacttgtgaccaaattca |
41786123 |
T |
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| Q |
318 |
ttagatagttacaccggtcgcgatgaaactcaacaaccaaacaaagctgtcttattgcttccctcttcttctccccaaggctatccaaatcctcatc |
414 |
Q |
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| T |
41786122 |
ttagatagttacaccggtcgcgatgaaactcaacaaccaaacaaagctgtcttattgcttccctcttcttctccccaaggctatccaaatcctcatc |
41786026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 457 - 708
Target Start/End: Complemental strand, 41785983 - 41785732
Alignment:
| Q |
457 |
aagctggctcactgcatttgtcaagttcaatttctctcctccttctttgctcactgtggcttctaaattccatactttgtctcttaacaacaattcctgc |
556 |
Q |
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| T |
41785983 |
aagctggctcactgcatttgtcaagttcaatttctctcctccttctttgctcactgtggcttctaaattccatactttgtctcttaacaacaattcctgc |
41785884 |
T |
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| Q |
557 |
tcttctttttcgctcagtagcgttgtaagacaatccacattttccttcaattgtttcatttcgacgttcattttctttatccaatccttcgcaaactgaa |
656 |
Q |
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| T |
41785883 |
tcttctttttcgctcagtagcgttgtaagacaatccacattttccttcaattgtttcatttcgacgttcattttctttatccaatccttcgcaaactgaa |
41785784 |
T |
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| Q |
657 |
cctcacaaagcattttagacacattgctcatgacacactctctgtgctcctc |
708 |
Q |
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| T |
41785783 |
cctcacaaagcattttagacacattgctcatgacacactctctgtgttcctc |
41785732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 694
Target Start/End: Complemental strand, 10835178 - 10835111
Alignment:
| Q |
623 |
ttcattttctttatccaatccttcgcaaactgaacctcacaaagcattttagacacattgctcatgacacac |
694 |
Q |
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| T |
10835178 |
ttcattttctttatcctatccttagcaaaccgaacctc----agaattttagaaacactgctcatgacacac |
10835111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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