View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_11 (Length: 412)
Name: NF9959_low_11
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 35285349 - 35285042
Alignment:
| Q |
18 |
aataacttatcacttaaggaccaaattaactacttaaaggcatagttaaagattgaacagactaataaaagacaaatgaattcaattttgtttttctaat |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35285349 |
aataacttatcacttgaggaccaaattaactacttaaaggcatagttaaagattgaacagactaataaaagacaaatgaattcaattttgtttttctaat |
35285250 |
T |
|
| Q |
118 |
tttaaaacattaaagactattatatcaaacctcacacattcaaaaaattatcaaaacatagtggaggcacaatctataatatagatcaaattcatttctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35285249 |
tttaaaacattaaagactattatatcaaacctcacacattcaaaaaattatcaaaacatagtggaggcacaatctataatatagatcaatttcatttctt |
35285150 |
T |
|
| Q |
218 |
ttttgttttatcgagtactaaaaatttatttatttttcagaatcaagtgtaggtcatggcccacacatcctttcaagtgggtccgtccctcaccttagtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35285149 |
ttttgttttatcgagtactaaaaatttatttatttttcagaatcaagtgtaggtcatggcccacacatcctttcaagtgggtccgtccctcaccttagtg |
35285050 |
T |
|
| Q |
318 |
tattttat |
325 |
Q |
| |
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|||||||| |
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| T |
35285049 |
tattttat |
35285042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 52669454 - 52669414
Alignment:
| Q |
238 |
aaaatttatttatttttcagaatcaagtgtaggtcatggcc |
278 |
Q |
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| T |
52669454 |
aaaatttatttattttccaaaatcaagtgtaggccatggcc |
52669414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 8381154 - 8381216
Alignment:
| Q |
159 |
aaaaaattatcaaaacatagtggaggcacaatctataatatagatcaaattcatttctttttt |
221 |
Q |
| |
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|||||| |||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
8381154 |
aaaaaaatatcaaaacatagtggagtcacaatttataatatagatcaggttcatttctttttt |
8381216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 25770724 - 25770635
Alignment:
| Q |
188 |
aatctataatatagatcaaattcatttcttttttgttttatcgagtactaaaaatttatttatttttcagaatcaagtgtaggtcatggcc |
278 |
Q |
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|||| |||||||||||||| || ||||||||||| || || |||||||||| |||||||||||| || || |||||||||||||||||| |
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| T |
25770724 |
aatcaataatatagatcaattttatttcttttttattgtactaagtactaaaa-tttatttattttccaaaaccaagtgtaggtcatggcc |
25770635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 32497685 - 32497636
Alignment:
| Q |
172 |
aacatagtggaggcacaatctataatatagatcaaattcatttctttttt |
221 |
Q |
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||||||||||| ||||||| ||||||||||| ||| |||||||||||||| |
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| T |
32497685 |
aacatagtggaagcacaatatataatatagaccaatttcatttctttttt |
32497636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 917789 - 917823
Alignment:
| Q |
166 |
tatcaaaacatagtggaggcacaatctataatata |
200 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
917789 |
tatcaaaacatagtggaggcacaatatataatata |
917823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 30540325 - 30540209
Alignment:
| Q |
174 |
catagtggaggcacaatctataatatagatcaaattcatttcttttttgttttatcgagtactaaaaatttatttatttttcagaatcaagtgtaggtca |
273 |
Q |
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||||||| ||||||||||||| ||||||||||| ||| |||||||||| || ||| |||||| || |||| |||||||| || || |||||| ||| || |
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| T |
30540325 |
catagtgtaggcacaatctatgatatagatcaatttcttttcttttttattgtattaagtact-aatatttgtttattttccaaaaccaagtgcaggcca |
30540227 |
T |
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| Q |
274 |
tggcccacacatcctttc |
291 |
Q |
| |
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||||| ||||| |||||| |
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| T |
30540226 |
tggcctacacaccctttc |
30540209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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