View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_12 (Length: 401)
Name: NF9959_low_12
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 50467027 - 50466644
Alignment:
| Q |
17 |
catcaacattagtgtaatatagttatcattccttttatgtatcatgaggttacaattattctttgtcatgtttactattaaaagcttaatggctttaatt |
116 |
Q |
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| T |
50467027 |
catcaacattagtgtaatatagttatcattccttttatgtatcatgaggttacaattattctttgtcatgtttactattaaaagcttaatggctttaatt |
50466928 |
T |
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| Q |
117 |
tgataagaaataatgttggggacctctactcaaacctcattttcaagtttgctaagtgttacttttatctacaactaagccattattttaggacccatga |
216 |
Q |
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| T |
50466927 |
tgataagaaataatgttggggacctctactcaaacctcattttcaagtttgctaagtgttacttttatctacaactaagccattattttaggacccatga |
50466828 |
T |
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| Q |
217 |
tcacatggatcagtgtacaagcatttgtttagtcacagaaaaaacaggtgcattattatttctaagttttctctataggataaggtgtgaagctttggat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50466827 |
tcacatggatcagtgtacaagcatttgtttagtcacagaaaaaacaggtgcattattatttctaagttttctctataggataaggtgtgaagctttggat |
50466728 |
T |
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| Q |
317 |
aagagatcccaacttccctagctaatagtaactaataagcttgatatggagtcaactttaatggtttatagataccatcggattg |
401 |
Q |
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| T |
50466727 |
aagagatcccaac-tccctagctaatagtaactaataagcttgatatggagtcaactttaatggtttatagataccatcggattg |
50466644 |
T |
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