View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_13 (Length: 398)
Name: NF9959_low_13
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 37 - 392
Target Start/End: Complemental strand, 52661670 - 52661326
Alignment:
| Q |
37 |
tgagtgtcttaattgttaagagtgaagatatattttggtctttcacaattttttaacaatccaatttagtttatgataaaaataaaactcaaattagtcc |
136 |
Q |
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| T |
52661670 |
tgagtgtcttaattgttaagagtgaaga-atattttggtctttcacaattttttaacaag-------agtttatgataaaaacaaaactcaaattagtcc |
52661579 |
T |
|
| Q |
137 |
atcacattttcatattcgagacaaattaaacattctattagaatttgttcatagtatgaaaatgatagagactaatttgagtttatttttatcaatgact |
236 |
Q |
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| T |
52661578 |
atcacattttcatattcgagacaaattaaacattctattataatttgttcatagtatgaaaatgatagagactaatttgagtttatttttatcaatgact |
52661479 |
T |
|
| Q |
237 |
aaagtggaccgttggaaaattacgatggttcaaaaaggatcatcactctcattaattttcagttttatggctgttgactaaatctaattagaaacttaac |
336 |
Q |
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| T |
52661478 |
aatgtggaccgttagaaaattaggatggttcaaaaaggatcatca--ctcattaattttcagtttt-tggctgttgactaaatctaattagaaacttaac |
52661382 |
T |
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| Q |
337 |
gatgaagatttaaaaacaaaacaaaatttgatacagtatatagaaacaacacgaaa |
392 |
Q |
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| T |
52661381 |
gatgaagatttagaaacaaaacaaaatttgatatagtatttagaaacaacacgaaa |
52661326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 4959039 - 4959115
Alignment:
| Q |
70 |
tttggtctttcacaattttttaacaatccaatttagtttatgataaaaataaaactcaaattagtccatcacatttt |
146 |
Q |
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| T |
4959039 |
tttgggctctcacaatttttttacaatccaattcaatttttgacaaaaataaaacacaaattagtcaataacatttt |
4959115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 35819195 - 35819119
Alignment:
| Q |
53 |
taagagtgaagatatattttggtctttcacaattttttaacaatccaatttagtttatgataaaaataaaactcaaa |
129 |
Q |
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| T |
35819195 |
taagagtgaagattcattttggttcttcccaattttttcgcgatccaatttaatttctgacaaaaataaaattcaaa |
35819119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 26493174 - 26493110
Alignment:
| Q |
70 |
tttggtctttcacaattttttaacaatccaatttagtttatgataaaaataaaactcaaattagtc |
135 |
Q |
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| T |
26493174 |
tttggtcattcacaatttttttataatcgaatt-agttcatgataaaaataaaacttaaattagtc |
26493110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 12441468 - 12441418
Alignment:
| Q |
114 |
aaaaataaaactcaaattagtccatcacattttcatattcgagacaaatta |
164 |
Q |
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| T |
12441468 |
aaaaataaaattcaaattagtccataacattttaatacttgagacaaatta |
12441418 |
T |
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