View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_14 (Length: 391)
Name: NF9959_low_14
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 2 - 378
Target Start/End: Original strand, 37807061 - 37807437
Alignment:
| Q |
2 |
tggaaccactaaatgagcgctataatctctattcccaatccatgaactttctatagctaatccattcccaaactcatgagacacaacagggtgatgcaaa |
101 |
Q |
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| T |
37807061 |
tggaaccactaattgagcgctataatctctattcccaatccatgaactttctatagctaatccattcccatactcatgagacacaacagggtgatgcaaa |
37807160 |
T |
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| Q |
102 |
tcaaccgaattaaccgatttacgcgtgtagataaatgcaactgaaggtggacnnnnnnnccacttatgcaaattacttgtgtaaaaatcagctccaatct |
201 |
Q |
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| T |
37807161 |
tcaaccgaattaaccgatttacgcgtgtagataaatgcaaccgaaggtggacaaaaaaaccacttatgcaaattacttgtgtaaaaatcagctccaatct |
37807260 |
T |
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| Q |
202 |
cttgcatatcaacgcgcggggtgcaccctaccgcatgagctgcatcaacaaaaacttgatcaacaccttcctcgcgacaaatcttaactaactctttcac |
301 |
Q |
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| T |
37807261 |
cttgcatatcaacgcgcggggtgcaccctaccgcatgagctgcatcaacgaaaacttgatcaacaccttcctcgcgacaaatcttaactaactctttcac |
37807360 |
T |
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| Q |
302 |
cggaatcaccatgcttggcatggaagtcacatgatcaataaccgctaatctaactttattactactaccttcgctct |
378 |
Q |
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| T |
37807361 |
cggaatcaccatgcttggcatggaagtcacatgatcaataaccgctaatctaactttattactactaccttcgctct |
37807437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 45784274 - 45784173
Alignment:
| Q |
3 |
ggaaccactaaatgagcgctataatctctattcccaatccatgaactttctatagctaatccattcccaaactcatgagacacaacagggtgatgcaaat |
102 |
Q |
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| T |
45784274 |
ggaaccaccaattgagcactataatcccttgtgccaatccaagcactttccacagctaatccatttccatactcatgagacacaacaggatgatgcaaat |
45784175 |
T |
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| Q |
103 |
ca |
104 |
Q |
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|| |
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| T |
45784174 |
ca |
45784173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 354
Target Start/End: Complemental strand, 45784107 - 45783917
Alignment:
| Q |
161 |
ccacttatgcaaattacttgtgtaaaaatcagctccaatctcttgcatatcaacgcgcggggtgcaccctaccgcatgagctgcatcaacaaaaacttga |
260 |
Q |
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| T |
45784107 |
ccacttatgcaaattactggtataaaaatcagcaccaatatcttgcatatcaac---atcagtacagccaattgaatgagcagcatcaacaaaaacctgt |
45784011 |
T |
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| Q |
261 |
tcaacaccttcctcgcgacaaatcttaactaactctttcaccggaatcaccatgcttggcatggaagtcacatgatcaataaccgctaatctaa |
354 |
Q |
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|||||||||||||| | |||||||| || || || ||||| |||||||| | | ||||| ||||| ||||||||||| || ||||| |||| |
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| T |
45784010 |
tcaacaccttcctctctacaaatctgaatcaattccttcacaggaatcacaacacaaggcatagaagtaacatgatcaatcacagctaacctaa |
45783917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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