View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9959_low_15 (Length: 380)

Name: NF9959_low_15
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9959_low_15
NF9959_low_15
[»] chr7 (4 HSPs)
chr7 (19-364)||(44348429-44348774)
chr7 (251-317)||(24967136-24967202)
chr7 (184-237)||(18749834-18749887)
chr7 (192-240)||(42281528-42281576)
[»] chr8 (4 HSPs)
chr8 (109-207)||(4558722-4558821)
chr8 (271-316)||(18356414-18356458)
chr8 (251-307)||(7918720-7918776)
chr8 (167-238)||(12361174-12361246)
[»] chr3 (2 HSPs)
chr3 (192-311)||(37273142-37273269)
chr3 (257-317)||(45590732-45590792)
[»] chr4 (4 HSPs)
chr4 (181-239)||(7694025-7694083)
chr4 (192-281)||(18628518-18628605)
chr4 (182-239)||(35064853-35064910)
chr4 (257-317)||(35743350-35743410)
[»] chr1 (4 HSPs)
chr1 (101-158)||(7200939-7200996)
chr1 (183-239)||(6102153-6102209)
chr1 (184-240)||(2522629-2522685)
chr1 (182-238)||(17778955-17779011)
[»] chr6 (5 HSPs)
chr6 (107-158)||(2514624-2514675)
chr6 (252-311)||(33385605-33385664)
chr6 (167-236)||(25426152-25426222)
chr6 (258-311)||(25103233-25103286)
chr6 (95-144)||(33823391-33823440)
[»] chr2 (3 HSPs)
chr2 (252-311)||(17443543-17443602)
chr2 (192-238)||(43205317-43205363)
chr2 (114-158)||(38239648-38239692)
[»] chr5 (1 HSPs)
chr5 (182-238)||(32703292-32703348)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 44348429 - 44348774
Alignment:
Q  19 atcattcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaatagaaacaaacatacacttaattaatcgcttattatgta 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348429 atcagtcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaatagaaacaaacatacacttaattaatcgcttattatgta 44348528  T
Q  119 agtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatgtagctataagccgttttcataagttatcacggagaattt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348529 agtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatgtagctataagccgttttcataagttatcacggagaattt 44348628  T
Q  219 atagaaataagttgaaaacaaacttgtcataattgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348629 atagaaataagttgaaaacaaacttgtcataattgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtcc 44348728  T
Q  319 ttgtaatgcaaacaaactatgagtattatgttgaataaatgcaatg 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44348729 ttgtaatgcaaacaaactatgagtattatgttgaataaatgcaatg 44348774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 24967136 - 24967202
Alignment:
Q  251 ttgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtc 317  Q
    |||||| ||||| ||||||||||||||||||  |||| ||||||||||||||||| |||||||||||    
T  24967136 ttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataagctcaaaaaagtc 24967202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 18749887 - 18749834
Alignment:
Q  184 tataagccgttttcataagttatcacggagaatttatagaaataagttgaaaac 237  Q
    ||||||| ||||||||||| ||||||||| || |||| |||||||| |||||||    
T  18749887 tataagctgttttcataagctatcacggaaaacttatggaaataagctgaaaac 18749834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 42281576 - 42281528
Alignment:
Q  192 gttttcataagttatcacggagaatttatagaaataagttgaaaacaaa 240  Q
    ||||||||||| |||||| ||||  ||||||||||||| ||||||||||    
T  42281576 gttttcataagctatcactgagagcttatagaaataagctgaaaacaaa 42281528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 4558722 - 4558821
Alignment:
Q  109 ttattatgtaagtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatgta-gctataagccgttttcataagttatc 207  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||||  |  || |||| ||||||| || ||||||||| |||| |||||| ||||    
T  4558722 ttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatc 4558821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 18356414 - 18356458
Alignment:
Q  271 aaacagtctcaacaatgcttatactagtagataagttcaaaaaagt 316  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18356414 aaacagtctca-caatgcttatactagtagataagttcaaataagt 18356458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 7918776 - 7918720
Alignment:
Q  251 ttgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagtt 307  Q
    |||||||||||| |||| |||||||||||||  | || |||| ||||||||||||||    
T  7918776 ttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtt 7918720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 12361174 - 12361246
Alignment:
Q  167 aattgttttcatgta-gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaaca 238  Q
    |||||||||||| || ||||||||| |||||||||||||||   |||||  | || |||||||||||||||||    
T  12361174 aattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaaca 12361246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 37273142 - 37273269
Alignment:
Q  192 gttttcataagttatcacggagaatttatagaaataagttgaaaacaa-------acttgtcataa-ttgttttcataaactcttccaaacagtctcaac 283  Q
    ||||||||||| ||||  |||||| |||| ||||||||||||||||||       || |||||||| |||||| ||||| |||| ||||||||||||| |    
T  37273142 gttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcacc 37273241  T
Q  284 aatgcttatactagtagataagttcaaa 311  Q
    | ||||||| ||| || |||||||||||    
T  37273242 agtgcttatgctaataaataagttcaaa 37273269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 45590732 - 45590792
Alignment:
Q  257 tcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtc 317  Q
    |||||| |||| |||||||||||||  | ||||||| ||||||||||||||||||||||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtc 45590792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 7694083 - 7694025
Alignment:
Q  181 agctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaa 239  Q
    |||||||||| ||||||||||||||||  ||||| ||||| |||||||| |||||||||    
T  7694083 agctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaa 7694025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 18628605 - 18628518
Alignment:
Q  192 gttttcataagttatcacggagaatttatagaaataagttgaaaacaaacttgtcataa-ttgttttcataaactcttccaaacagtctca 281  Q
    ||||||||||||||||  |||||  |||| |||||||| ||||||| ||||  |||||| |||||||||||| |||| |||||||||||||    
T  18628605 gttttcataagttatcttggagagcttatggaaataagctgaaaac-aact--tcataagttgttttcataagctctcccaaacagtctca 18628518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 35064853 - 35064910
Alignment:
Q  182 gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaa 239  Q
    |||||| || ||||||||||| ||||| ||||| ||||| |||||||| |||||||||    
T  35064853 gctatatgctgttttcataagatatcatggagagtttatggaaataagctgaaaacaa 35064910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 35743350 - 35743410
Alignment:
Q  257 tcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaaaaagtc 317  Q
    |||||| |||||| |||||||||||  |||||||||| ||||||||||  ||||| |||||    
T  35743350 tcataagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtc 35743410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 7200996 - 7200939
Alignment:
Q  101 ttaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa 158  Q
    |||||||||||| |||||||||||||  ||||||||||||| || ||| |||||||||    
T  7200996 ttaatcgcttatcatgtaagtgtttacttataagctatttccataataaaagataaaa 7200939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 6102153 - 6102209
Alignment:
Q  183 ctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaa 239  Q
    |||||||| ||||||||||| ||||  ||||||||||| |||||||| |||||||||    
T  6102153 ctataagctgttttcataagctatctgggagaatttatggaaataagctgaaaacaa 6102209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 2522629 - 2522685
Alignment:
Q  184 tataagccgttttcataagttatcacggagaatttatagaaataagttgaaaacaaa 240  Q
    ||||||| ||||||||||  |||   ||||||||||| |||||||||||||||||||    
T  2522629 tataagctgttttcataaactattctggagaatttatggaaataagttgaaaacaaa 2522685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 17778955 - 17779011
Alignment:
Q  182 gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaaca 238  Q
    ||||||||| ||||||||||| ||||  ||||||||| | |||||||| ||||||||    
T  17778955 gctataagcagttttcataagctatcttggagaatttttggaaataaggtgaaaaca 17779011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 2514624 - 2514675
Alignment:
Q  107 gcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa 158  Q
    |||||| ||||||||| ||| ||||||||||||||||| ||| |||||||||    
T  2514624 gcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaa 2514675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 33385605 - 33385664
Alignment:
Q  252 tgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaa 311  Q
    ||||| |||||||||||||||||||| |||  | ||||||||  ||||||||||||||||    
T  33385605 tgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaa 33385664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 25426152 - 25426222
Alignment:
Q  167 aattgttttcatgta-gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaa 236  Q
    ||||| ||||||||| |||||||||  |||| ||||| ||||  |||||||||||||||||||||| ||||    
T  25426152 aattgctttcatgtaagctataagctatttttataagctatcctggagaatttatagaaataagttaaaaa 25426222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 25103286 - 25103233
Alignment:
Q  258 cataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaa 311  Q
    |||||||||||||||||||||||| || ||||||| | | |||||||| |||||    
T  25103286 cataaactcttccaaacagtctcagcactgcttatgccaatagataagctcaaa 25103233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 33823440 - 33823391
Alignment:
Q  95 acttaattaatcgcttattatgtaagtgtttaagtataagctatttctat 144  Q
    |||||||||| |||||||||| ||| |||||| | |||||||||||||||    
T  33823440 acttaattaaacgcttattatataaatgtttatgcataagctatttctat 33823391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 17443602 - 17443543
Alignment:
Q  252 tgttttcataaactcttccaaacagtctcaacaatgcttatactagtagataagttcaaa 311  Q
    ||||| ||||||||||||||||||||||||  | ||||||||  |||| |||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaa 17443543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 43205317 - 43205363
Alignment:
Q  192 gttttcataagttatcacggagaatttatagaaataagttgaaaaca 238  Q
    ||||||||||| |||||||||||  |||| |||||||||||||||||    
T  43205317 gttttcataagctatcacggagagcttatggaaataagttgaaaaca 43205363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 38239692 - 38239648
Alignment:
Q  114 atgtaagtgtttaagtataagctatttctatgatagaagataaaa 158  Q
    ||||||||||||| ||||||||||||||||| | | |||||||||    
T  38239692 atgtaagtgtttatgtataagctatttctataacaaaagataaaa 38239648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 32703348 - 32703292
Alignment:
Q  182 gctataagccgttttcataagttatcacggagaatttatagaaataagttgaaaaca 238  Q
    ||||||||  ||||||||||| ||||  |||||||||||| ||||||| ||||||||    
T  32703348 gctataagttgttttcataagctatctaggagaatttataaaaataagctgaaaaca 32703292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University