View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_16 (Length: 380)
Name: NF9959_low_16
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 7316131 - 7315773
Alignment:
| Q |
7 |
acatttacttatatgtaacttcataaaacatgagttgtttgatcagcttctatatgttactaaatcttgctaattgaaggatcattactatcaattacta |
106 |
Q |
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| T |
7316131 |
acatttacttatatgtaacttcataaaacatgagttgtttgatcagcttctatatgttactaaatcttgctgattgaaggatcattactatcaattacta |
7316032 |
T |
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| Q |
107 |
acttttcaagcatttgctttttcaattgtttcccacattaactcgttctatacaagagactacttttagatttattttttcaaagtagatatctgtttaa |
206 |
Q |
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| T |
7316031 |
acttttcaagcatttgctttttcaattgtttcccacattaacttgttctatacaagagactacttttagatttattttttcaaagtagatatctgtttaa |
7315932 |
T |
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| Q |
207 |
tttcagtttctttttatagttaattctaattataaactaattttatcaaagaagtgtgcaacattaagaatggcattctaccttcacaacatctgacaaa |
306 |
Q |
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| T |
7315931 |
tttcagtttctttttatagttaattctaattataaactaattttatcaaagaagtgtgcaacattaagaatggcattctaccttcacaacatctgacaaa |
7315832 |
T |
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| Q |
307 |
acagtccttttaatgatatgattgtagtaatgttgatgggaattggatattgttcttat |
365 |
Q |
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| T |
7315831 |
acagtccttttaatgatatgattgtagtaatgttgatgggaattggatattgttcttat |
7315773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 67 - 256
Target Start/End: Original strand, 7219899 - 7220084
Alignment:
| Q |
67 |
taaatcttgctaattgaaggatcattactatcaattactaacttttcaagcatttgctttttcaattgtttcccacattaactcgttctatacaagagac |
166 |
Q |
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| T |
7219899 |
taaaacttgctgattgaaggatcattactatcagatactagcttttcaagcatttgctttttcagttgtttcccacattaac-------attgaagagac |
7219991 |
T |
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| Q |
167 |
tacttttagatttattttttcaaag----tagatatctgtttaatttcagtttctttttatagttaattctaattataaactaattttatcaaa |
256 |
Q |
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| T |
7219992 |
tacttttagattta-ttattcaaagaatatcgatatttgtttgatttcagtttctttttatagttaattctaattttaaactaattttatcaaa |
7220084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 8164098 - 8164264
Alignment:
| Q |
10 |
tttacttatatgtaacttcataaaacatgagttgtttgatcagcttctatatgttactaaatcttgctaattgaaggatcattactatcaattactaact |
109 |
Q |
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| T |
8164098 |
tttacttatatgcatttgcatataacataagttgttgaattagcttctatatgttactataagtt---aattgaaggatcattactatcagatacaagct |
8164194 |
T |
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| Q |
110 |
tttcaagcatttgctttttcaattgtttcccacattaactcgttctatacaagagactacttttagattt |
179 |
Q |
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| T |
8164195 |
tttcaagcatttgctttttcaattgtttcccacattaacttgtgctatagaagagactacttttagattt |
8164264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 8164263 - 8164365
Alignment:
| Q |
217 |
tttttatagttaattctaattataaactaattttatcaaagaagtgtgcaacattaagaatggcattctaccttcacaacatctgacaaaacagtccttt |
316 |
Q |
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| T |
8164263 |
tttttatagttatttctaattttaaactaaatttattaaagaagtgtgcaacaccaagaatggcatttcaccttcacaacatctgagaaaactgtccttt |
8164362 |
T |
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| Q |
317 |
taa |
319 |
Q |
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||| |
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| T |
8164363 |
taa |
8164365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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