View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9959_low_18 (Length: 361)

Name: NF9959_low_18
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9959_low_18
NF9959_low_18
[»] chr3 (11 HSPs)
chr3 (266-303)||(30710576-30710613)
chr3 (272-303)||(43715239-43715270)
chr3 (323-352)||(37695763-37695792)
chr3 (323-351)||(1778632-1778660)
chr3 (323-351)||(3901247-3901275)
chr3 (323-351)||(5323035-5323063)
chr3 (323-351)||(8679152-8679180)
chr3 (323-351)||(10366747-10366775)
chr3 (323-351)||(12904853-12904881)
chr3 (323-351)||(36460514-36460542)
chr3 (323-351)||(36476573-36476601)
[»] chr2 (9 HSPs)
chr2 (270-303)||(34451481-34451514)
chr2 (276-352)||(17122929-17123002)
chr2 (272-303)||(14523521-14523552)
chr2 (272-303)||(17695261-17695292)
chr2 (323-352)||(37322417-37322446)
chr2 (323-351)||(5272235-5272263)
chr2 (323-351)||(7494934-7494962)
chr2 (323-351)||(8947148-8947176)
chr2 (323-351)||(17695319-17695347)
[»] chr5 (12 HSPs)
chr5 (272-304)||(41492191-41492223)
chr5 (272-303)||(1248753-1248784)
chr5 (272-303)||(2588212-2588243)
chr5 (323-352)||(4818540-4818569)
chr5 (318-351)||(22848480-22848513)
chr5 (323-352)||(40899907-40899936)
chr5 (323-352)||(41478816-41478845)
chr5 (323-352)||(41492291-41492320)
chr5 (323-351)||(2232165-2232193)
chr5 (323-351)||(6315873-6315901)
chr5 (323-351)||(8698298-8698326)
chr5 (323-351)||(19929935-19929963)
[»] chr1 (16 HSPs)
chr1 (272-304)||(31042730-31042762)
chr1 (272-303)||(15699073-15699104)
chr1 (272-303)||(37506057-37506088)
chr1 (85-138)||(4671128-4671181)
chr1 (276-309)||(26258089-26258122)
chr1 (323-352)||(35367791-35367820)
chr1 (274-303)||(37275536-37275565)
chr1 (274-303)||(40145001-40145030)
chr1 (276-308)||(2981994-2982026)
chr1 (323-351)||(6785245-6785273)
chr1 (323-351)||(13579722-13579750)
chr1 (323-351)||(35682895-35682923)
chr1 (323-351)||(37276450-37276478)
chr1 (323-351)||(38787330-38787358)
chr1 (323-351)||(39864100-39864128)
chr1 (272-304)||(41121976-41122008)
[»] chr7 (14 HSPs)
chr7 (272-303)||(6495091-6495122)
chr7 (272-303)||(21760142-21760173)
chr7 (272-303)||(31930660-31930691)
chr7 (272-303)||(43873863-43873894)
chr7 (323-352)||(21390291-21390320)
chr7 (318-351)||(37245681-37245714)
chr7 (272-305)||(38391692-38391725)
chr7 (270-303)||(47045623-47045656)
chr7 (323-351)||(759196-759224)
chr7 (323-351)||(2459467-2459495)
chr7 (323-351)||(21350730-21350758)
chr7 (323-351)||(25571415-25571443)
chr7 (272-304)||(28202466-28202498)
chr7 (323-351)||(36790736-36790764)
[»] chr6 (8 HSPs)
chr6 (272-303)||(11656097-11656128)
chr6 (267-304)||(7808394-7808431)
chr6 (274-303)||(23397767-23397796)
chr6 (323-351)||(181545-181573)
chr6 (323-351)||(11656043-11656071)
chr6 (323-351)||(15046113-15046141)
chr6 (323-351)||(15058106-15058134)
chr6 (276-304)||(34299931-34299959)
[»] chr4 (11 HSPs)
chr4 (272-303)||(5841585-5841616)
chr4 (272-303)||(25233115-25233146)
chr4 (323-351)||(6643764-6643792)
chr4 (323-351)||(17237400-17237428)
chr4 (323-351)||(21240808-21240836)
chr4 (272-304)||(26147774-26147806)
chr4 (323-351)||(28500987-28501015)
chr4 (323-351)||(33790835-33790863)
chr4 (323-351)||(47464469-47464497)
chr4 (323-351)||(49428446-49428474)
chr4 (323-351)||(49746950-49746978)
[»] chr8 (4 HSPs)
chr8 (273-303)||(4428501-4428531)
chr8 (265-299)||(40109639-40109673)
chr8 (274-303)||(39405697-39405726)
chr8 (323-351)||(22771934-22771962)
[»] scaffold0095 (1 HSPs)
scaffold0095 (274-303)||(50139-50168)
[»] scaffold0016 (1 HSPs)
scaffold0016 (323-352)||(76281-76310)
[»] scaffold1809 (1 HSPs)
scaffold1809 (323-351)||(782-810)
[»] scaffold0583 (1 HSPs)
scaffold0583 (323-351)||(2014-2042)


Alignment Details
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 30710576 - 30710613
Alignment:
Q  266 tatatatctcaaaataattgtcactttagaatatcaat 303  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30710576 tatatgtctcaaaataattgtcactttagaatatcaat 30710613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 43715239 - 43715270
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  43715239 tctcaaaataattgtcactttagaatatcaat 43715270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Complemental strand, 37695792 - 37695763
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  37695792 tattatacccttatttattgaatttcatct 37695763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 1778632 - 1778660
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  1778632 tattatacccttatttattgaatttcatc 1778660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 3901275 - 3901247
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  3901275 tattatacccttatttattgaatttcatc 3901247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 5323063 - 5323035
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  5323063 tattatacccttatttattgaatttcatc 5323035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 8679180 - 8679152
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  8679180 tattatacccttatttattgaatttcatc 8679152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 10366775 - 10366747
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  10366775 tattatacccttatttattgaatttcatc 10366747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 12904853 - 12904881
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  12904853 tattatacccttatttattgaatttcatc 12904881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 36460542 - 36460514
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  36460542 tattatacccttatttattgaatttcatc 36460514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 36476573 - 36476601
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  36476573 tattatacccttatttattgaatttcatc 36476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 34451514 - 34451481
Alignment:
Q  270 tatctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||||    
T  34451514 tatctcaaaataattgtcactttagaatatcaat 34451481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 17122929 - 17123002
Alignment:
Q  276 aaaataattgtcactttagaatatcaatataatannnnnnnnctcagtattatacccttatttattgaatttcatct 352  Q
    |||||||||||||||||||||||||||| |||||         ||| |||||||| |||||||||||||||||||||    
T  17122929 aaaataattgtcactttagaatatcaatgtaatatttttt---tcattattatactcttatttattgaatttcatct 17123002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 14523552 - 14523521
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  14523552 tctcaaaataattgtcactttagaatatcaat 14523521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 17695261 - 17695292
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  17695261 tctcaaaataattgtcactttagaatatcaat 17695292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 37322417 - 37322446
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  37322417 tattatacccttatttattgaatttcatct 37322446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 5272263 - 5272235
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  5272263 tattatacccttatttattgaatttcatc 5272235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 7494962 - 7494934
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  7494962 tattatacccttatttattgaatttcatc 7494934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 8947176 - 8947148
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  8947176 tattatacccttatttattgaatttcatc 8947148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 17695319 - 17695347
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  17695319 tattatacccttatttattgaatttcatc 17695347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 41492191 - 41492223
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaata 304  Q
    |||||||||||||||||||||||||||||||||    
T  41492191 tctcaaaataattgtcactttagaatatcaata 41492223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 1248784 - 1248753
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  1248784 tctcaaaataattgtcactttagaatatcaat 1248753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 2588243 - 2588212
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  2588243 tctcaaaataattgtcactttagaatatcaat 2588212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 4818540 - 4818569
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  4818540 tattatacccttatttattgaatttcatct 4818569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 22848513 - 22848480
Alignment:
Q  318 ctcagtattatacccttatttattgaatttcatc 351  Q
    |||| |||||||||||||||||||||||||||||    
T  22848513 ctcactattatacccttatttattgaatttcatc 22848480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 40899907 - 40899936
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  40899907 tattatacccttatttattgaatttcatct 40899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 41478816 - 41478845
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  41478816 tattatacccttatttattgaatttcatct 41478845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 41492291 - 41492320
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  41492291 tattatacccttatttattgaatttcatct 41492320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 2232193 - 2232165
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  2232193 tattatacccttatttattgaatttcatc 2232165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 6315901 - 6315873
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  6315901 tattatacccttatttattgaatttcatc 6315873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 8698298 - 8698326
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  8698298 tattatacccttatttattgaatttcatc 8698326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 19929935 - 19929963
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  19929935 tattatacccttatttattgaatttcatc 19929963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 31042730 - 31042762
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaata 304  Q
    |||||||||||||||||||||||||||||||||    
T  31042730 tctcaaaataattgtcactttagaatatcaata 31042762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 15699073 - 15699104
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  15699073 tctcaaaataattgtcactttagaatatcaat 15699104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 37506057 - 37506088
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  37506057 tctcaaaataattgtcactttagaatatcaat 37506088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 4671128 - 4671181
Alignment:
Q  85 aaataattaagtgaaagcttaaattggaagaataaatgttacaccaaaacaaaa 138  Q
    ||||||||||||||| | | |||||| ||||| |||| ||||||||||||||||    
T  4671128 aaataattaagtgaagggtaaaattgaaagaaaaaatattacaccaaaacaaaa 4671181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 26258122 - 26258089
Alignment:
Q  276 aaaataattgtcactttagaatatcaatataata 309  Q
    ||||||||||||||||||||||||||||| ||||    
T  26258122 aaaataattgtcactttagaatatcaatacaata 26258089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 35367791 - 35367820
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  35367791 tattatacccttatttattgaatttcatct 35367820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 37275536 - 37275565
Alignment:
Q  274 tcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||    
T  37275536 tcaaaataattgtcactttagaatatcaat 37275565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 40145030 - 40145001
Alignment:
Q  274 tcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||    
T  40145030 tcaaaataattgtcactttagaatatcaat 40145001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 2982026 - 2981994
Alignment:
Q  276 aaaataattgtcactttagaatatcaatataat 308  Q
    |||||||||||||||||| ||||||||||||||    
T  2982026 aaaataattgtcactttaaaatatcaatataat 2981994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 6785245 - 6785273
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  6785245 tattatacccttatttattgaatttcatc 6785273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 13579750 - 13579722
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  13579750 tattatacccttatttattgaatttcatc 13579722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 35682923 - 35682895
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  35682923 tattatacccttatttattgaatttcatc 35682895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 37276450 - 37276478
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  37276450 tattatacccttatttattgaatttcatc 37276478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 38787330 - 38787358
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  38787330 tattatacccttatttattgaatttcatc 38787358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 39864100 - 39864128
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  39864100 tattatacccttatttattgaatttcatc 39864128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 41122008 - 41121976
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaata 304  Q
    |||||||||||||||||||||| ||||||||||    
T  41122008 tctcaaaataattgtcactttaaaatatcaata 41121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 6495122 - 6495091
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  6495122 tctcaaaataattgtcactttagaatatcaat 6495091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 21760173 - 21760142
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  21760173 tctcaaaataattgtcactttagaatatcaat 21760142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 31930691 - 31930660
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  31930691 tctcaaaataattgtcactttagaatatcaat 31930660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 43873863 - 43873894
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  43873863 tctcaaaataattgtcactttagaatatcaat 43873894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 21390291 - 21390320
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  21390291 tattatacccttatttattgaatttcatct 21390320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 37245681 - 37245714
Alignment:
Q  318 ctcagtattatacccttatttattgaatttcatc 351  Q
    |||| |||||||||||||||||||||||||||||    
T  37245681 ctcactattatacccttatttattgaatttcatc 37245714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 38391692 - 38391725
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaatat 305  Q
    |||||||||||||||||||||| |||||||||||    
T  38391692 tctcaaaataattgtcactttataatatcaatat 38391725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 47045656 - 47045623
Alignment:
Q  270 tatctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||| ||||    
T  47045656 tatctcaaaataattgtcactttagaataccaat 47045623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 759224 - 759196
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  759224 tattatacccttatttattgaatttcatc 759196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 2459467 - 2459495
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  2459467 tattatacccttatttattgaatttcatc 2459495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 21350758 - 21350730
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  21350758 tattatacccttatttattgaatttcatc 21350730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 25571415 - 25571443
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  25571415 tattatacccttatttattgaatttcatc 25571443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 28202498 - 28202466
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaata 304  Q
    ||||||||||||||||||||||||||| |||||    
T  28202498 tctcaaaataattgtcactttagaataccaata 28202466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 36790736 - 36790764
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  36790736 tattatacccttatttattgaatttcatc 36790764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 11656128 - 11656097
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  11656128 tctcaaaataattgtcactttagaatatcaat 11656097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 7808431 - 7808394
Alignment:
Q  267 atatatctcaaaataattgtcactttagaatatcaata 304  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  7808431 atatatctcaaaataattgtcaatttagaatagcaata 7808394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 23397796 - 23397767
Alignment:
Q  274 tcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||    
T  23397796 tcaaaataattgtcactttagaatatcaat 23397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 181545 - 181573
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  181545 tattatacccttatttattgaatttcatc 181573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 11656071 - 11656043
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  11656071 tattatacccttatttattgaatttcatc 11656043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 15046113 - 15046141
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  15046113 tattatacccttatttattgaatttcatc 15046141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 15058106 - 15058134
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  15058106 tattatacccttatttattgaatttcatc 15058134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 34299931 - 34299959
Alignment:
Q  276 aaaataattgtcactttagaatatcaata 304  Q
    |||||||||||||||||||||||||||||    
T  34299931 aaaataattgtcactttagaatatcaata 34299959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 5841616 - 5841585
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  5841616 tctcaaaataattgtcactttagaatatcaat 5841585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 303
Target Start/End: Original strand, 25233115 - 25233146
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||||    
T  25233115 tctcaaaataattgtcactttagaatatcaat 25233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 6643792 - 6643764
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  6643792 tattatacccttatttattgaatttcatc 6643764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 17237428 - 17237400
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  17237428 tattatacccttatttattgaatttcatc 17237400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 21240836 - 21240808
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  21240836 tattatacccttatttattgaatttcatc 21240808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 26147806 - 26147774
Alignment:
Q  272 tctcaaaataattgtcactttagaatatcaata 304  Q
    ||||||||||||||||||||||||||| |||||    
T  26147806 tctcaaaataattgtcactttagaataccaata 26147774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 28501015 - 28500987
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  28501015 tattatacccttatttattgaatttcatc 28500987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 33790863 - 33790835
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  33790863 tattatacccttatttattgaatttcatc 33790835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 47464497 - 47464469
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  47464497 tattatacccttatttattgaatttcatc 47464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 49428474 - 49428446
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  49428474 tattatacccttatttattgaatttcatc 49428446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 49746950 - 49746978
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  49746950 tattatacccttatttattgaatttcatc 49746978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 303
Target Start/End: Complemental strand, 4428531 - 4428501
Alignment:
Q  273 ctcaaaataattgtcactttagaatatcaat 303  Q
    |||||||||||||||||||||||||||||||    
T  4428531 ctcaaaataattgtcactttagaatatcaat 4428501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 40109639 - 40109673
Alignment:
Q  265 ttatatatctcaaaataattgtcactttagaatat 299  Q
    |||||||||||||||||||||||| ||||||||||    
T  40109639 ttatatatctcaaaataattgtcattttagaatat 40109673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 39405697 - 39405726
Alignment:
Q  274 tcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||    
T  39405697 tcaaaataattgtcactttagaatatcaat 39405726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 22771962 - 22771934
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  22771962 tattatacccttatttattgaatttcatc 22771934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 50139 - 50168
Alignment:
Q  274 tcaaaataattgtcactttagaatatcaat 303  Q
    ||||||||||||||||||||||||||||||    
T  50139 tcaaaataattgtcactttagaatatcaat 50168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 76281 - 76310
Alignment:
Q  323 tattatacccttatttattgaatttcatct 352  Q
    ||||||||||||||||||||||||||||||    
T  76281 tattatacccttatttattgaatttcatct 76310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 810 - 782
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  810 tattatacccttatttattgaatttcatc 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 351
Target Start/End: Original strand, 2014 - 2042
Alignment:
Q  323 tattatacccttatttattgaatttcatc 351  Q
    |||||||||||||||||||||||||||||    
T  2014 tattatacccttatttattgaatttcatc 2042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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