View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_19 (Length: 359)
Name: NF9959_low_19
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 18557746 - 18557413
Alignment:
| Q |
18 |
cttccgagatattacacaacgggaatcaccagcatttgaaacaacaacttggttgtttctaataactgcaacacaggctgtgcttcctgaagttggtcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557746 |
cttccgagatattacacaacgggaatcaccagcatttgaaacaacaacttggttgtttctaataactgcaacacaggctgtgcttcctgaagttggtcca |
18557647 |
T |
|
| Q |
118 |
gcaaaatcagaatgaggtccctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557646 |
gcaaaatcagaatgaggtccctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccac |
18557547 |
T |
|
| Q |
218 |
tgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatccactcttagaaaagcttgttgaagagatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557546 |
tgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatccactcttagaaaagcttgttgaagagatgt |
18557447 |
T |
|
| Q |
318 |
tcctatatctccttcatgaccatcataaacacca |
351 |
Q |
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| T |
18557446 |
tcctatatctccttcatgaccatcataaacacca |
18557413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 48833802 - 48833650
Alignment:
| Q |
137 |
cctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatc |
236 |
Q |
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| T |
48833802 |
cctcctcaaaggcccaatcatcaactcggttaataccattgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatc |
48833703 |
T |
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| Q |
237 |
tcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatcca |
289 |
Q |
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| T |
48833702 |
tcccaagattgatagctccctccatcctctttgaccacgcatcatctcatcca |
48833650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 48834120 - 48833999
Alignment:
| Q |
18 |
cttccgagatattacacaacgggaatcaccagcatttgaaacaacaacttggttgtttctaataactgcaacacaggctgtgcttcctgaagttggtcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48834120 |
cttccgagatattacacaacgggaatcaccagcatttgcaacaacaacttggttgtttctaataactgcaacacaggctgtgcttcctgaagttggtcca |
48834021 |
T |
|
| Q |
118 |
gcaaaatcagaatgaggtccct |
139 |
Q |
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|||||||||||||||||||||| |
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| T |
48834020 |
gcaaaatcagaatgaggtccct |
48833999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 48833135 - 48833098
Alignment:
| Q |
292 |
cttagaaaagcttgttgaagagatgttcctatatctcc |
329 |
Q |
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| T |
48833135 |
cttagaaaagcttgttgaagagaggttcctatatctcc |
48833098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 3079929 - 3079809
Alignment:
| Q |
19 |
ttccgagatattacacaacgggaatcaccagcatttgaaacaacaacttggttgtttctaataactgcaacacaggctgtgcttcctgaagttggtccag |
118 |
Q |
| |
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|||| ||||||||| || || |||||||||||||| | ||||| || | ||||||||||||| | ||||||||| || |||||||||||| |||||||| |
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| T |
3079929 |
ttcctagatattacgcagcgtgaatcaccagcattcgcaacaaaaagtaggttgtttctaatgattgcaacacaagcagtgcttcctgaatttggtccat |
3079830 |
T |
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| Q |
119 |
caaaatcagaatgaggtccct |
139 |
Q |
| |
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|||| || |||||||| |||| |
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| T |
3079829 |
caaagtctgaatgaggcccct |
3079809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 3079658 - 3079548
Alignment:
| Q |
179 |
tgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcat |
278 |
Q |
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|||||| |||||||| |||||| ||||| || || ||| ||||| |||| |||||| || |||| | || ||||||||||| |||||||||||||| |
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| T |
3079658 |
tgcttcttggagaccgaatcaatccttcaattattccattgaacccttttaccttatcacctaagactgctaattccctccatcccctttgaccacgcat |
3079559 |
T |
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| Q |
279 |
catctcatcca |
289 |
Q |
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||||||||||| |
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| T |
3079558 |
catctcatcca |
3079548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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