View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_21 (Length: 348)
Name: NF9959_low_21
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_21 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 22983115 - 22983438
Alignment:
| Q |
1 |
aaaatggtatggagggagtatcaagtatgtctagccaacttttttgtcatttttgttaaaatagtcgcttttcttttgctatttaacttgttactagagt |
100 |
Q |
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||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
22983115 |
aaaatgggacggagggagtatcaagcatgtctagccaacttttttgtcatttttgtttaaatattcgcttttcttttgttatttgacttgttactagagt |
22983214 |
T |
|
| Q |
101 |
cttcaaccattttgaggttactaaattatgtttaactttttctccatgacactttatttttaatttcaaaaatggattttgactaatgaaatgaatttca |
200 |
Q |
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||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
22983215 |
cttcaaccattttgaggttactaaagtatgttcaaccttttctccatgaca-----ttttttatttcaaaaatggattttaactaatgaaatgaatttca |
22983309 |
T |
|
| Q |
201 |
atttgttaactatgtcatgatcaattttatgtcaattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccat |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22983310 |
atttgttaactatgtcatgatcaattttatgtctcttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccat |
22983409 |
T |
|
| Q |
301 |
tgtccatcttttcttatttggaggccttc |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22983410 |
tgtccatcttttcttatttggaggccttc |
22983438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 21250154 - 21250058
Alignment:
| Q |
234 |
aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttct |
330 |
Q |
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| T |
21250154 |
aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttggaggccttct |
21250058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 22933357 - 22933264
Alignment:
| Q |
236 |
ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
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||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
22933357 |
ttacctccaacatgtctccaaggttgacgacgaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttgaaggccttc |
22933264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 21264377 - 21264282
Alignment:
| Q |
234 |
aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
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||||||||| || |||||||||| ||| |||||||||||||| | || |||| |||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
21264377 |
aattacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttggagaccttc |
21264282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 22928738 - 22928644
Alignment:
| Q |
235 |
attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
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||||||||||| || ||||||| ||| ||||||||||||| | ||| |||| |||||||||||| ||||||||||||| ||||||||| ||||| |
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| T |
22928738 |
attacctccaaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttc |
22928644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 23022004 - 23022098
Alignment:
| Q |
235 |
attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
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||||||||||| || ||||||| || ||||||||||||| | ||| |||| |||||||||||| ||||||||||||| ||||||||| ||||| |
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| T |
23022004 |
attacctccaaaatgtctccaacatttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttc |
23022098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 21351064 - 21350970
Alignment:
| Q |
235 |
attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| || |||||| | | || |||||| ||| |||||||| ||||| |||||||| |
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| T |
21351064 |
attacctccaacatgtctccaatgttgacgacaaaagcatcagagaggggcttgataggaatccacattccgtcttttctgatttgaaggccttc |
21350970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 21212032 - 21211938
Alignment:
| Q |
236 |
ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttct |
330 |
Q |
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|
||||||| | ||| |||||||||||||| ||||||||||| | ||| || | || || |||||| |||||||||| ||||||| ||||||||| |
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| T |
21212032 |
ttacctctagcatgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttct |
21211938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 21320471 - 21320426
Alignment:
| Q |
236 |
ttacctccaacatatctccaatgttgatgacaaaagcattagggag |
281 |
Q |
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||||||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
21320471 |
ttacctctaacaaatctccaatgttgaccacaaaagcattagggag |
21320426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 23204 - 23298
Alignment:
| Q |
235 |
attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
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|||||||| ||||| ||||||||||| | |||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23204 |
attacctctaacatgtctccaatgtttacgacaaaagcaccggcgagtggtttaacagaaatccattgtccatcttttcttatttggaggccttc |
23298 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 62343 - 62435
Alignment:
| Q |
237 |
tacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttc |
329 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||||||||| | ||| || | || || |||||| |||||||||||||| ||| |||||||| |
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| T |
62343 |
tacctctaacatgtctccaatgttgatcacaaaagcatttgagagtggcttaataggaatccacattccatcttttcttacttgaaggccttc |
62435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 26914196 - 26914292
Alignment:
| Q |
234 |
aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttct |
330 |
Q |
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||||||||| | ||| |||||||||||||| ||||||||||| | ||| || | || || |||||| |||||||||| ||||||| ||||||||| |
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| T |
26914196 |
aattacctctagcatgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttct |
26914292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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